View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8584_low_7 (Length: 467)
Name: NF8584_low_7
Description: NF8584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8584_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 414; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 8 - 449
Target Start/End: Complemental strand, 5161342 - 5160902
Alignment:
| Q |
8 |
gagcagagaggagggacagacagaatatttcattgtctagtttaaaaacaaattgtacatatgaaacaattgcactcaagttcctgtaaatcatcttcgg |
107 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5161342 |
gagccgagaggagggacagacagaatatttcattgtctagtttaaaaacaaattgtacatatgaaacaattgcacttaagttcctgtaaatcatcttcgg |
5161243 |
T |
|
| Q |
108 |
gacaagggacaaaggaagcacgctgtgtatagaatcgaactggacctgtcattgatactgtaacacaagaaaagaaaccaatcaggcaaatcgatcttcc |
207 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5161242 |
gacaaggtacaaaggaagcacgctgtgtatagaatcgaactggacctgtcattgatactgtaacacaagaaaagaaaccaatcaggcaaatcgatcttcc |
5161143 |
T |
|
| Q |
208 |
aaacaatgaagatgcattttcattctgtctaatcaaaaattatttaatattcctttctcagttaacatatatcaatctgttacaaacataaaacaactga |
307 |
Q |
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|||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5161142 |
aaacaatgaagatgcattttcattctgtctaatc-aaaagtatttaatattcctttctcagttaacatatatcaatctgttacaaacataaaacaactga |
5161044 |
T |
|
| Q |
308 |
tcctaatctacactaccttaagaaatcagtgaattcaatctaaatcaaacagatttgttgcattcactacttcttgtatttttccaaattcaattagtct |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5161043 |
tcctaatctacactaccttaagaaatcagtgaattcaatctaaatcaaacagatttgttgcattcactacttcttgtatttttccaaattcaattagtcg |
5160944 |
T |
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| Q |
408 |
taacaaattcattgcctataacctcaacccatctgccactgc |
449 |
Q |
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| T |
5160943 |
taacaaattcattgcctataacctcaacccatctgccactgc |
5160902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 27 - 397
Target Start/End: Complemental strand, 5158380 - 5158028
Alignment:
| Q |
27 |
acagaatatttcattgtctagtttaaaaacaaattgtacatatgaaacaattgcactcaagttcctgtaaatcatcttcgggacaagggacaaaggaagc |
126 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||| |
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| T |
5158380 |
acagaatatttcattgtctagtataaaaacaaattgtacaaatgaaacaattgcactcaagttcctgtaaatcatcttcccgacaaggga-------agc |
5158288 |
T |
|
| Q |
127 |
acgctgtgtatagaatcgaactggacctgtcattgatactgtaacacaagaaaagaaaccaatcaggcaaatcgatcttccaaacaatgaagatgcattt |
226 |
Q |
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|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |
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| T |
5158287 |
acgctgtgtatagaatcggactggatctgtcattgatactgtaacacaagaaaagaaaccaatcaggcacatcgat------------gaagatgcattt |
5158200 |
T |
|
| Q |
227 |
tcattctgtctaatcaaaaattatttaatattcctttctcagttaacatatatcaatctgttacaaacataaaacaactgatcctaatctacactacctt |
326 |
Q |
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| T |
5158199 |
gcattctgtcagatcaaaagt-acttgatattcctttctacgttaacacatatcaatctgttacaaacataaaacaactgatcattatctacactacctt |
5158101 |
T |
|
| Q |
327 |
aagaaatcagtgaattcaatctaaatcaaac-agatttgttgcattcactacttc-ttgtatttttccaaatt |
397 |
Q |
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||||||||||||| |||| |||||||| ||| | ||||||| |||||||| ||| ||| ||||||||||||| |
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| T |
5158100 |
aagaaatcagtgagttcactctaaatccaactgggtttgttggattcactatttctttgcatttttccaaatt |
5158028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 351
Target Start/End: Complemental strand, 44995209 - 44995173
Alignment:
| Q |
315 |
ctacactaccttaagaaatcagtgaattcaatctaaa |
351 |
Q |
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|||||||||| ||||||||||||||||| |||||||| |
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| T |
44995209 |
ctacactaccataagaaatcagtgaatttaatctaaa |
44995173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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