View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8584_low_8 (Length: 454)

Name: NF8584_low_8
Description: NF8584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8584_low_8
NF8584_low_8
[»] chr3 (5 HSPs)
chr3 (1-307)||(50427048-50427362)
chr3 (332-435)||(50426926-50427029)
chr3 (117-168)||(584712-584763)
chr3 (115-167)||(32112110-32112162)
chr3 (115-171)||(37334951-37335007)
[»] chr2 (4 HSPs)
chr2 (115-171)||(10618867-10618923)
chr2 (124-171)||(42774783-42774830)
chr2 (115-167)||(4007120-4007172)
chr2 (131-167)||(37402189-37402225)
[»] chr5 (1 HSPs)
chr5 (116-171)||(14299438-14299493)
[»] chr7 (3 HSPs)
chr7 (125-171)||(39734639-39734685)
chr7 (117-171)||(597862-597916)
chr7 (115-171)||(40491690-40491746)
[»] chr6 (1 HSPs)
chr6 (115-165)||(46205-46255)
[»] chr1 (5 HSPs)
chr1 (122-168)||(11817241-11817287)
chr1 (115-165)||(47899371-47899421)
chr1 (127-171)||(15514998-15515042)
chr1 (115-147)||(22548216-22548248)
chr1 (115-167)||(38512435-38512487)
[»] chr8 (2 HSPs)
chr8 (107-176)||(32994149-32994218)
chr8 (115-167)||(7602045-7602097)


Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 50427362 - 50427048
Alignment:
Q  1 tgggatgaaattaccaaacaattcctaagtgaatggttcaacaccgggaagtagcctaaaaaattaagtgtaaaattgaatacaaaa---------taag 91  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||         ||||    
T  50427362 tgggatgaaattaccacacaattcctaagtgaatggttcaacaccgg-aagtagactaaaaaattaagtgtaaaattgaatacaaaaaaaaaaaaataag 50427264  T
Q  92 aagcatagatagagttgacaatagattttaagtgaattgaatttgtaaaattgattctagctaaaaatgagttgaaggtacaattggaggtcctctcaaa 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50427263 aagcatagatagagttgacaatagattttaagtgaattgaatttgtaaaattgattctagctaaaaatgagttgaaggtacaattggaggtcctctcaaa 50427164  T
Q  192 gaggaacgaaatggaaaagaagattgagtgcgtacctgagtcatggcggcagcagcgagcatgccaggatggtgatacatctgttgttgttgaagcaaag 291  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50427163 gaggaacgaaatggaaaagaagattgagtgcgtacctgggtcatggcggcagcagcgagcatgccaggatggtgatacatctgttgttgttgaagcaaag 50427064  T
Q  292 cttgctgcatgagtgc 307  Q
    ||||||||||||||||    
T  50427063 cttgctgcatgagtgc 50427048  T

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Target: chr3; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 332 - 435
Target Start/End: Complemental strand, 50427029 - 50426926
Alignment:
Q  332 ctgcaactttagcctctgttgcatattaatttaatttaatactcgatcaattgatttctgaagaagaaagaggaatcgaatcgaatcaaaacgcgtgtaa 431  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50427029 ctgcaactttagcctctgttgcatattaatttaatttaatactcgatcaattgatttctgaagaagaaagaggaatcgaatcgaatcaaaacgcgtgtaa 50426930  T
Q  432 ttag 435  Q
    ||||    
T  50426929 ttag 50426926  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 168
Target Start/End: Original strand, 584712 - 584763
Alignment:
Q  117 ttttaagtgaattgaatttgtaaaattgattctagctaaaaatgagttgaag 168  Q
    |||| |||||||||| ||||||||||||||| ||||||||| | ||||||||    
T  584712 ttttgagtgaattgattttgtaaaattgattttagctaaaattaagttgaag 584763  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 167
Target Start/End: Complemental strand, 32112162 - 32112110
Alignment:
Q  115 gattttaagtgaattgaatttgtaaaattgattctagctaaaaatgagttgaa 167  Q
    |||||| |||||||||| | ||||||||||||| | | |||||||||||||||    
T  32112162 gattttgagtgaattgattatgtaaaattgattatggataaaaatgagttgaa 32112110  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 171
Target Start/End: Original strand, 37334951 - 37335007
Alignment:
Q  115 gattttaagtgaattgaatttgtaaaattgattctagctaaaaatgagttgaaggta 171  Q
    ||||||||||||||||| | | ||||||||||||   |||||| |||||||||||||    
T  37334951 gattttaagtgaattgattatataaaattgattccgactaaaattgagttgaaggta 37335007  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 115 - 171
Target Start/End: Original strand, 10618867 - 10618923
Alignment:
Q  115 gattttaagtgaattgaatttgtaaaattgattctagctaaaaatgagttgaaggta 171  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  10618867 gatttttagtgaattgattttgtaaaattgattctagctaaaaatgaattgaaggta 10618923  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 171
Target Start/End: Original strand, 42774783 - 42774830
Alignment:
Q  124 tgaattgaatttgtaaaattgattctagctaaaaatgagttgaaggta 171  Q
    |||||||| |||||||||||||||||  |||||||| |||||||||||    
T  42774783 tgaattgattttgtaaaattgattctgactaaaaataagttgaaggta 42774830  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 167
Target Start/End: Original strand, 4007120 - 4007172
Alignment:
Q  115 gattttaagtgaattgaatttgtaaaattgattctagctaaaaatgagttgaa 167  Q
    ||||||||||| ||||| ||||||||||||||| | | ||||| |||||||||    
T  4007120 gattttaagtggattgattttgtaaaattgattatggataaaagtgagttgaa 4007172  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 131 - 167
Target Start/End: Original strand, 37402189 - 37402225
Alignment:
Q  131 aatttgtaaaattgattctagctaaaaatgagttgaa 167  Q
    ||||||||||||||||||||| ||||| |||||||||    
T  37402189 aatttgtaaaattgattctagttaaaagtgagttgaa 37402225  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 116 - 171
Target Start/End: Complemental strand, 14299493 - 14299438
Alignment:
Q  116 attttaagtgaattgaatttgtaaaattgattctagctaaaaatgagttgaaggta 171  Q
    ||||| |||||||||| | ||||||||||||||||| ||||| |||||||||||||    
T  14299493 attttgagtgaattgattgtgtaaaattgattctagataaaagtgagttgaaggta 14299438  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 125 - 171
Target Start/End: Original strand, 39734639 - 39734685
Alignment:
Q  125 gaattgaatttgtaaaattgattctagctaaaaatgagttgaaggta 171  Q
    ||||||| ||||||||||||||||||||||||| |||||| ||||||    
T  39734639 gaattgattttgtaaaattgattctagctaaaactgagtttaaggta 39734685  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 171
Target Start/End: Original strand, 597862 - 597916
Alignment:
Q  117 ttttaagtgaattgaatttgtaaaattgattctagctaaaaatgagttgaaggta 171  Q
    |||| |||||||||| | ||||||||||||| | ||||||| |||||||||||||    
T  597862 tttttagtgaattgagtatgtaaaattgattttggctaaaactgagttgaaggta 597916  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 171
Target Start/End: Complemental strand, 40491746 - 40491690
Alignment:
Q  115 gattttaagtgaattgaatttgtaaaattgattctagctaaaaatgagttgaaggta 171  Q
    |||||| |||||||||| | ||||||||||||| |  |||||| |||||||||||||    
T  40491746 gattttgagtgaattgattctgtaaaattgattttgactaaaagtgagttgaaggta 40491690  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 115 - 165
Target Start/End: Original strand, 46205 - 46255
Alignment:
Q  115 gattttaagtgaattgaatttgtaaaattgattctagctaaaaatgagttg 165  Q
    |||||| |||||||||| | |||||||||||||||| |||||| |||||||    
T  46205 gattttgagtgaattgattctgtaaaattgattctaactaaaagtgagttg 46255  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 168
Target Start/End: Original strand, 11817241 - 11817287
Alignment:
Q  122 agtgaattgaatttgtaaaattgattctagctaaaaatgagttgaag 168  Q
    |||||||||| |||||||||||||||||| ||||||  |||||||||    
T  11817241 agtgaattgattttgtaaaattgattctaactaaaagcgagttgaag 11817287  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 115 - 165
Target Start/End: Complemental strand, 47899421 - 47899371
Alignment:
Q  115 gattttaagtgaattgaatttgtaaaattgattctagctaaaaatgagttg 165  Q
    |||||| |||||||||| |||||||||||||||||  |||||| |||||||    
T  47899421 gattttgagtgaattgattttgtaaaattgattcttactaaaagtgagttg 47899371  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 127 - 171
Target Start/End: Original strand, 15514998 - 15515042
Alignment:
Q  127 attgaatttgtaaaattgattctagctaaaaatgagttgaaggta 171  Q
    ||||| ||||| ||||||| ||||||||||| |||||||||||||    
T  15514998 attgattttgtgaaattgagtctagctaaaagtgagttgaaggta 15515042  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 147
Target Start/End: Original strand, 22548216 - 22548248
Alignment:
Q  115 gattttaagtgaattgaatttgtaaaattgatt 147  Q
    ||||||||||||||||| |||||||||||||||    
T  22548216 gattttaagtgaattgattttgtaaaattgatt 22548248  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 167
Target Start/End: Complemental strand, 38512487 - 38512435
Alignment:
Q  115 gattttaagtgaattgaatttgtaaaattgattctagctaaaaatgagttgaa 167  Q
    ||||||||||||||||| ||||||||||| ||||| | || || |||||||||    
T  38512487 gattttaagtgaattgattttgtaaaattaattcttgatataagtgagttgaa 38512435  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 176
Target Start/End: Original strand, 32994149 - 32994218
Alignment:
Q  107 tgacaatagattttaagtgaattgaatttgtaaaattgattctagctaaaaatgagttgaaggtacaatt 176  Q
    ||||||| |||||| | |||| ||| | ||||||||||||||| ||| ||| ||||||||||||| ||||    
T  32994149 tgacaattgattttgaatgaactgattatgtaaaattgattctggctgaaagtgagttgaaggtaaaatt 32994218  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 167
Target Start/End: Original strand, 7602045 - 7602097
Alignment:
Q  115 gattttaagtgaattgaatttgtaaaattgattctagctaaaaatgagttgaa 167  Q
    |||||| |||||||||| ||| |||||||||||| | |||||||||| |||||    
T  7602045 gattttgagtgaattgattttataaaattgattcgaactaaaaatgaattgaa 7602097  T

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