View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8584_low_9 (Length: 442)
Name: NF8584_low_9
Description: NF8584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8584_low_9 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 387; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 17 - 419
Target Start/End: Original strand, 6399472 - 6399874
Alignment:
| Q |
17 |
catcaccatcaacccctttcaccattttcttacaagcactaaggctacaactctctcctaacctcttaaatatttgagacaattcctcagcactaatttt |
116 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6399472 |
catcactatcaacccctttcaccattttcttacaagcactaaggctacaactctctcctaacctcttaaatatttgagacaattcctcagcactaatttt |
6399571 |
T |
|
| Q |
117 |
cccatcaccatttatatcaaatacttgaaaagcactcttaatatcttcttcttttatcttactaccctctccattgaacatttccataaactctttaaag |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
6399572 |
cccatcaccatttatatcaaatacttgaaaagcactcttaatatcttcttcttttatcttactaccttctccattgaacatttccataaactctttaaag |
6399671 |
T |
|
| Q |
217 |
tctatgaagccatctttgtcagagtccattgctttaaatgctttcactgcatcattgtcacaaataatccccttatccaaagcttttgcagctgctttat |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6399672 |
tctatgaagccatctttgtcagagtccattgctttaaatgctttcactgcatcattgtcacaaataatccccttatccaaagcttttgcagctgctttat |
6399771 |
T |
|
| Q |
317 |
actcttccagactaatcttgccatctttgtttgtgtcgaatttctcaaacacccatttcatttcatctttctttggttggaaactcatttcagcgttcga |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
6399772 |
actcttccagactaatcttgccatctttgtttttgtcgaatttctcaaacacccatttcatttcatctttctttggttggaaactcatttcagcattcga |
6399871 |
T |
|
| Q |
417 |
tgt |
419 |
Q |
| |
|
||| |
|
|
| T |
6399872 |
tgt |
6399874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 17 - 419
Target Start/End: Complemental strand, 6413030 - 6412628
Alignment:
| Q |
17 |
catcaccatcaacccctttcaccattttcttacaagcactaaggctacaactctctcctaacctcttaaatatttgagacaattcctcagcactaatttt |
116 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6413030 |
catcactatcaacccctttcaccattttcttacaagcactaaggctacaactctctcctaacctcttaaatatttgagacaattcctcagcactaatttt |
6412931 |
T |
|
| Q |
117 |
cccatcaccatttatatcaaatacttgaaaagcactcttaatatcttcttcttttatcttactaccctctccattgaacatttccataaactctttaaag |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
6412930 |
cccatcaccatttatatcaaatacttgaaaagcactcttaatatcttcttcttttatcttactaccttctccattgaacatttccataaactctttaaag |
6412831 |
T |
|
| Q |
217 |
tctatgaagccatctttgtcagagtccattgctttaaatgctttcactgcatcattgtcacaaataatccccttatccaaagcttttgcagctgctttat |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6412830 |
tctatgaagccatctttgtcagagtccattgctttaaatgctttcactgcatcattgtcacaaataatccccttatccaaagcttttgcagctgctttat |
6412731 |
T |
|
| Q |
317 |
actcttccagactaatcttgccatctttgtttgtgtcgaatttctcaaacacccatttcatttcatctttctttggttggaaactcatttcagcgttcga |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
6412730 |
actcttccagactaatcttgccatctttgtttttgtcgaatttctcaaacacccatttcatttcatctttctttggttggaaactcatttcagcattcga |
6412631 |
T |
|
| Q |
417 |
tgt |
419 |
Q |
| |
|
||| |
|
|
| T |
6412630 |
tgt |
6412628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 17 - 407
Target Start/End: Complemental strand, 6410284 - 6409897
Alignment:
| Q |
17 |
catcaccatcaacccctttcaccattttcttacaagcactaaggctacaactctctcctaacctcttaaatatttgagacaattcctcagcactaatttt |
116 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
6410284 |
catcaccatcgacacctttcaccattttcttacaagcactaaggctgcaactctctcctaacctcttaaatatttgagacaattcctcagcactgatttt |
6410185 |
T |
|
| Q |
117 |
cccatcaccatttatatcaaatacttgaaaagcactcttaatatcttcttcttttatcttactaccctctccattgaacatttccataaactctttaaag |
216 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||| | |||||||||||||||||||| |||||||||||| |
|
|
| T |
6410184 |
cccatctccatttatatcaaatacttgaaaagcactcttaatctcctcttcttttatcttattgttttctccattgaacatttccatgaactctttaaag |
6410085 |
T |
|
| Q |
217 |
tctatgaagccatctttgtcagagtccattgctttaaatgctttcactgcatcattgtcacaaataatccccttatccaaagcttttgcagctgctttat |
316 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||||||||||||||||||| || | ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
6410084 |
tctatgaagccatctttgtcagagtccatcacgttaaatgctttcactgcatcaggatccc---caatccccttatccaaagattttgcagctgctttat |
6409988 |
T |
|
| Q |
317 |
actcttccagactaatcttgccatctttgtttgtgtcgaatttctcaaacacccatttcatttcatctttctttggttggaaactcatttc |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6409987 |
actcttccagactaatcttgccatctttgtttgtgtcaaatttctcaaacacccatttcatttcatctttctttggttggaaactcatttc |
6409897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 184 - 423
Target Start/End: Original strand, 6405258 - 6405494
Alignment:
| Q |
184 |
tctccattgaacatttccataaactctttaaagtctatgaagccatctttgtcagagtccattgctttaaatgctttcactgcatcattgtcacaaataa |
283 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||| || ||||||||||||||||||||| | || | | |
|
|
| T |
6405258 |
tctccattgaacatttccataaactctctaaagtctatgaatccatctttgtcatagtccatggccttaaatgctttcactgcatcagtatcccctac-- |
6405355 |
T |
|
| Q |
284 |
tccccttatccaaagcttttgcagctgctttatactcttccagactaatcttgccatctttgtttgtgtcgaatttctcaaacacccatttcatttcatc |
383 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| || |||| |||||||||||| |
|
|
| T |
6405356 |
-ccccttatccaaagcttttgcagctgctttatactcttccaaactaatattgccatctttgtttgtgtcgaatttctcgaaaacccgtttcatttcatc |
6405454 |
T |
|
| Q |
384 |
tttctttggttggaaactcatttcagcgttcgatgtttgt |
423 |
Q |
| |
|
||||||| |||||||||||| ||| || ||| |||||||| |
|
|
| T |
6405455 |
tttcttttgttggaaactcagttcggcattcaatgtttgt |
6405494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 54 - 117
Target Start/End: Original strand, 6403009 - 6403072
Alignment:
| Q |
54 |
actaaggctacaactctctcctaacctcttaaatatttgagacaattcctcagcactaattttc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
6403009 |
actaaggctacaactctctcctaacctcttaaatatttgagacaattcatcagcactaattttc |
6403072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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