View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8585_high_1 (Length: 338)
Name: NF8585_high_1
Description: NF8585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8585_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 18 - 321
Target Start/End: Original strand, 43435062 - 43435368
Alignment:
| Q |
18 |
cacagagtgatgatagaaacccaggcttcnnnnnnnncagtttaagaggaggttcatcaccgtataaagccgtcctattgaagacacatccagtgccgac |
117 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43435062 |
cacagagtgatgatagaaacccaggcttcttttttttcagtttaagaggaggttcatcaccgtataaagccgtcctattgaagacacatccagtgccgac |
43435161 |
T |
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| Q |
118 |
ataaacaggaccttgaatgccatccaaacctctgagatttatctgttcaagtgtcaagtttgaagaaaataagttatcagaaagaataaaaatggttgag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43435162 |
ataaacaggaccttgaatgccatccaaacctctgagatttatctgttcaagtgtcaagtttgaagaaaataagttatcagaaagaataaaaatggttgag |
43435261 |
T |
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| Q |
218 |
aaatcatcaagaataagaatcaaagtaaccatacaacatcaacaga---ataacaacatggttaagatacttacgtcaaagaaaacagtattacgattgg |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
43435262 |
aaatcatcaagaataagaatcaaagtaaccatacaacatcagcagaatcataacagcatggttaagatacttacctcaaagaaaacagtattacgattgg |
43435361 |
T |
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| Q |
315 |
catatcg |
321 |
Q |
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||||||| |
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| T |
43435362 |
catatcg |
43435368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 114; Significance: 9e-58; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 18 - 321
Target Start/End: Original strand, 13825041 - 13825336
Alignment:
| Q |
18 |
cacagagtgatgatagaaacccaggcttcnnnnnnnncagtttaagaggaggttcatcaccgtataaagccgtcctattgaagacacatccagtgccgac |
117 |
Q |
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||||||||||||| |||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||| |
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| T |
13825041 |
cacagagtgatgacagaaacccaggctttttatgtttcagtttaagaggaggttcttcgccgtataaagccgtcctattgaagacacatccagtaccgac |
13825140 |
T |
|
| Q |
118 |
ataaacaggaccttgaatgccatccaaacctctgagatttatctgttc---aagtgtcaagtttgaagaaaataagttatcagaaa--gaataaaaatgg |
212 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||| ||||| ||||| ||||||| ||| ||||| || |
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| T |
13825141 |
ataaacaggaccttgaatgccatccaaacctctcagatttatctgttcaagaagtgtaaagtttgatgaaaacaagttctcagaaaaggaaaaaaaaagg |
13825240 |
T |
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| Q |
213 |
ttgagaaatcatcaagaataagaatcaaagtaaccatacaacatcaacagaataacaacatggttaagatacttacgtcaaagaaaacagtattacgatt |
312 |
Q |
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| T |
13825241 |
ttaagaaaacatcaaaaatagaaa--acagtca-cagaaatcat----------acaacatggttaagatgcttacgtcaaagaaaacagtattacgatt |
13825327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 64 - 163
Target Start/End: Complemental strand, 9479911 - 9479812
Alignment:
| Q |
64 |
aggaggttcatcaccgtataaagccgtcctattgaagacacatccagtgccgacataaacaggaccttgaatgccatccaaacctctgagatttatctgt |
163 |
Q |
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|||||| |||| ||| |||||||| || |||||||||||||||||||| || |||||||| |||||||||||||||||||| ||||| | ||||||||| |
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| T |
9479911 |
aggagggtcataaccatataaagcagttctattgaagacacatccagtacccacataaacgggaccttgaatgccatccaaccctctcaagtttatctgt |
9479812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 277 - 321
Target Start/End: Complemental strand, 9479409 - 9479365
Alignment:
| Q |
277 |
taagatacttacgtcaaagaaaacagtattacgattggcatatcg |
321 |
Q |
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| T |
9479409 |
taagatacttacatcaaagaaaacagtattacggttggcatatcg |
9479365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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