View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8585_high_2 (Length: 317)
Name: NF8585_high_2
Description: NF8585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8585_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 7 - 308
Target Start/End: Complemental strand, 37378623 - 37378310
Alignment:
| Q |
7 |
gaaaagtgtagtgggtgggttttattctgaaaacattgcgagtattttttgttagagtaaggtggttgtggaatgaatgagaaggtgtaaatgaagaggg |
106 |
Q |
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| T |
37378623 |
gaaaagtgtagtgggtgggttttattctgaaaacattgcgagtattttttgttagagtaaggtagttgtggaatgaatgagaaggtgtaaatgaagaggg |
37378524 |
T |
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| Q |
107 |
taactttgattaccttatggtnnnnnnn-------------tgagaatactcttgtcttcctataatggagcggtggtttctttttgtggtgctgactgc |
193 |
Q |
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| T |
37378523 |
taactttgattaccttatggtaaaaaaaaataaaaaaaaaatgagaatactcttgtcttcctataatggagcggtggtttctttttgtggtgctgactgc |
37378424 |
T |
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| Q |
194 |
tgaggacctaggagaccattatggcgatgttggcagtgatgatgccattggtgaggtgaggtgaatctgattctcgcataaaagcctacagggatgtttt |
293 |
Q |
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| T |
37378423 |
tgaggacctaggagaccattatggcgatg-tggcagtgatgatgccattggtgaggtgaggtgaatctgattctcgcataaaagcctacagggatgtttt |
37378325 |
T |
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| Q |
294 |
tgtttgtagtattat |
308 |
Q |
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||||||||||||||| |
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| T |
37378324 |
tgtttgtagtattat |
37378310 |
T |
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