View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8585_high_3 (Length: 240)
Name: NF8585_high_3
Description: NF8585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8585_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 29321705 - 29321934
Alignment:
| Q |
1 |
taatccgattccccagaatctcttcttctccatgttgattgataatattcaacaaaatcggcaagagaatatcgtatacgtctgttctctgaagatcctt |
100 |
Q |
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| T |
29321705 |
taatccgattccccagaatctcttcttctccatgttgattgataatattcaacaaaatcggcaagagaatatcgtatacgtctgttctctgaagatcctt |
29321804 |
T |
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| Q |
101 |
cgacaatagcatcaacgaaagtgatgcattgaatgccaatgcattcaattcctgatccatcgagttaatcaaatttgagatgtttgagaatacgagatca |
200 |
Q |
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| T |
29321805 |
cgacaataacatcaacgaaagtgatgcagtgaatgccaatgctttcaattcctgatccatcgagttaatcaaatttgagatgtttgagaatacgagatca |
29321904 |
T |
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| Q |
201 |
aggttcccttgattcagccagaactctctg |
230 |
Q |
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| T |
29321905 |
aggttcccttgattcagccagaactctctg |
29321934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 20 - 158
Target Start/End: Original strand, 29332918 - 29333056
Alignment:
| Q |
20 |
ctcttcttctccatgttgattgataatattcaacaaaatcggcaagagaatatcgtatacgtctgttctctgaagatccttcgacaatagcatcaacgaa |
119 |
Q |
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| T |
29332918 |
ctcttcttccccatgttcatcgataatactcaacaaattcggcaacagaaaatcgcatacatctgttctcttaagctcctgcgacaataacatcaacgaa |
29333017 |
T |
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| Q |
120 |
agtgatgcattgaatgccaatgcattcaattcctgatcc |
158 |
Q |
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| T |
29333018 |
attgatgcattgtatgccaatcccttcaattccttatcc |
29333056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 29304519 - 29304681
Alignment:
| Q |
1 |
taatccgattccccagaatctcttcttctccatgttgattgataatattcaacaaaatcggcaagagaatatcgtatacgtctgttctctgaagatcctt |
100 |
Q |
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|||||| |||| |||||| |||||||||||| ||||||| ||| |||||||| ||| || |||||||| || | |||| || || || ||| ||| || |
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| T |
29304519 |
taatcctattcaccagaacctcttcttctccgtgttgatcgatgatattcaataaattccgcaagagagaattggatacttcatttttcagaaaatcatt |
29304618 |
T |
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| Q |
101 |
cgacaatagcatcaacgaaagtgatgcattgaatgccaatgcattcaattcctgatccatcga |
163 |
Q |
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||||||| ||||| |||| ||||| || | |||||| ||| |||||||||||||||||||| |
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| T |
29304619 |
tgacaataatatcaatgaaattgatgaatcgtatgccagtgccttcaattcctgatccatcga |
29304681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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