View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8585_low_1 (Length: 534)
Name: NF8585_low_1
Description: NF8585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8585_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 1 - 518
Target Start/End: Complemental strand, 39044867 - 39044350
Alignment:
| Q |
1 |
ctcatcaaccaatctcgtaaccgcccaatccatggtgaaggctattctagattcttcctccagtagccgtaaccgcaccgtcgccgccaccacctgtatc |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39044867 |
ctcatctaccaatctcgtaaccgcccaatccatggtgaaggctattctagattcttcctccagtagccgtaaccgcaccgtcgccgccaccacctgtatc |
39044768 |
T |
|
| Q |
101 |
gaaatactaacgaattcacaaaaccgcatttctctctccgacgacgctttaaaacatggaaaaattaaagacggtcgagcatggctgaccgccgccttag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
39044767 |
gaaatactaacgaattcacaaaaccgcatttctctctccaacgacgctttaacacatggaaaaattaaagacgctcgagcatggctgaccgccgccttag |
39044668 |
T |
|
| Q |
201 |
tttaccagtacgactgctggaacagcctgacatacgccaacgacacccacgccgtcggcgaagctatgtcgtttatcgattcccttgagacgctcactag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39044667 |
tttaccagtacgactgctggaacagcctgaaatacgccaacgacactcacgccgtcggtgaagctatgtcgtttatcgattcccttgagacgctcactag |
39044568 |
T |
|
| Q |
301 |
taacgctcttgccatggcgttttcctacgacgtttatggcaaagacacgtcgttgtggaagccgcctaccaccgagcgcgacggtttatggcaggccact |
400 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39044567 |
taacgcccttgccatggcgttttcctacgacgtttatggcaaagacacgtcgttttggaagccgcctaccaccgagcgcgacggtttatggcaggccact |
39044468 |
T |
|
| Q |
401 |
ggatcgggcggaggatcggtgtctagcatagggattccggcgaagttgacgccggatgttacagtgtgtaagggagggaagaatggttgttataagacgg |
500 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
39044467 |
ggatcgggcggaggatcggtgtctagcgtagggattccggcgaagttgacgccggatgttacagtgtgtaagggaggggagaagggttgttataagacgg |
39044368 |
T |
|
| Q |
501 |
tgcaagaagctgttaatg |
518 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
39044367 |
tgcaagaagctgttaatg |
39044350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University