View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8585_low_4 (Length: 288)
Name: NF8585_low_4
Description: NF8585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8585_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 181; Significance: 8e-98; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 19 - 211
Target Start/End: Complemental strand, 43493673 - 43493481
Alignment:
| Q |
19 |
tgtagtactttccaaatggatggcctaaagaagtactaagcgatgttgaaaatcttaccgaagagaagattgaccaagttgtgaatggatttttcaatga |
118 |
Q |
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| T |
43493673 |
tgtagtactttccaaatggatggcctaaagaagtagtaagcgatgttgagaatcttaccgaagagaagattgacaaagttgtgaatggatttttcaatga |
43493574 |
T |
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| Q |
119 |
ttttaaagagggctcattagaaaccaaagggtggcctcttattgtgagtgcatattctgtctcaaaagctgctataagtgcctacacaagaat |
211 |
Q |
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| T |
43493573 |
ttttaaagagggctcattagaaaccaaagggtggcctcttattgtgagtgcatattctgtctcaaaagctgctataagtgcctacacaagaat |
43493481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 213 - 280
Target Start/End: Complemental strand, 43493276 - 43493209
Alignment:
| Q |
213 |
tttaccagtcagcctttgctcatggcataaaatgcatttgttaggcacccaagtatattgttcttctc |
280 |
Q |
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| T |
43493276 |
tttaccagtcagcctttgctcatggcataaaatgcatttgttaggcacccaagtatattgttcctctc |
43493209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 28 - 155
Target Start/End: Complemental strand, 11871270 - 11871143
Alignment:
| Q |
28 |
ttccaaatggatggcctaaagaagtactaagcgatgttgaaaatcttaccgaagagaagattgaccaagttgtgaatggatttttcaatgattttaaaga |
127 |
Q |
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| T |
11871270 |
ttccaaatggatggcctaaggaagtattgagtgatgttgaagaacttacagaagaaaagattgatgaagttttgaatcaatttctaaaggattttaaaga |
11871171 |
T |
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| Q |
128 |
gggctcattagaaaccaaagggtggcct |
155 |
Q |
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| T |
11871170 |
ggggtcactagaaaacaaaggttggcct |
11871143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 155
Target Start/End: Complemental strand, 11865595 - 11865468
Alignment:
| Q |
28 |
ttccaaatggatggcctaaagaagtactaagcgatgttgaaaatcttaccgaagagaagattgaccaagttgtgaatggatttttcaatgattttaaaga |
127 |
Q |
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||||||||||||||||||| |||||| | || ||||||||||| |||| ||||| |||||||| ||||| ||||| |||| | || |||||||| || |
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| T |
11865595 |
ttccaaatggatggcctaaggaagtatttagtgatgttgaaaaccttatagaagaaaagattgatgaagttttgaataaatttctaaacgattttaatga |
11865496 |
T |
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| Q |
128 |
gggctcattagaaaccaaagggtggcct |
155 |
Q |
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| T |
11865495 |
gggttcactagaaaacaatggttggcct |
11865468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 130
Target Start/End: Complemental strand, 11877472 - 11877370
Alignment:
| Q |
28 |
ttccaaatggatggcctaaagaagtactaagcgatgttgaaaatcttaccgaagagaagattgaccaagttgtgaatggatttttcaatgattttaaaga |
127 |
Q |
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|||| |||||||||||||| || ||||| || ||| ||||||| ||||| ||||| |||||||| ||||| ||||| |||| | || ||||||||||| |
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| T |
11877472 |
ttcctaatggatggcctaaggaggtactgagtgatattgaaaaccttacagaagaaaagattgatgaagttttgaatcaatttctaaaggattttaaaga |
11877373 |
T |
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| Q |
128 |
ggg |
130 |
Q |
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||| |
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| T |
11877372 |
ggg |
11877370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 130
Target Start/End: Complemental strand, 11892479 - 11892377
Alignment:
| Q |
28 |
ttccaaatggatggcctaaagaagtactaagcgatgttgaaaatcttaccgaagagaagattgaccaagttgtgaatggatttttcaatgattttaaaga |
127 |
Q |
| |
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|||| |||||||||||||| || ||||| || ||| ||||||| ||||| ||||| |||||||| ||||| ||||| |||| | || ||||||||||| |
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| T |
11892479 |
ttcctaatggatggcctaaggaggtactgagtgatattgaaaaccttacagaagaaaagattgatgaagttttgaatcaatttctaaaggattttaaaga |
11892380 |
T |
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| Q |
128 |
ggg |
130 |
Q |
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||| |
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| T |
11892379 |
ggg |
11892377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 130
Target Start/End: Complemental strand, 11894888 - 11894786
Alignment:
| Q |
28 |
ttccaaatggatggcctaaagaagtactaagcgatgttgaaaatcttaccgaagagaagattgaccaagttgtgaatggatttttcaatgattttaaaga |
127 |
Q |
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|||| |||||||||||||| || ||||| || ||| ||||||| ||||| ||||| |||||||| ||||| ||||| |||| | || ||||||||||| |
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| T |
11894888 |
ttcctaatggatggcctaaggaggtactgagtgatattgaaaaccttacagaagaaaagattgatgaagttttgaatcaatttctaaaggattttaaaga |
11894789 |
T |
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| Q |
128 |
ggg |
130 |
Q |
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||| |
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| T |
11894788 |
ggg |
11894786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 156
Target Start/End: Original strand, 25861307 - 25861432
Alignment:
| Q |
31 |
caaatggatggcctaaagaagtactaagcgatgttgaaaatcttaccgaagagaagattgaccaagttgtgaatggatttttcaatgattttaaagaggg |
130 |
Q |
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|||||||| | ||||||||| ||||||| ||||| ||||||||||||||||| |||||||| || | |||||| |||| | || |||| ||| ||||| |
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| T |
25861307 |
caaatggacgacctaaagaaatactaagtgatgtcgaaaatcttaccgaagaaaagattgatgaaatcatgaatgaatttctaaaggattataaggaggg |
25861406 |
T |
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| Q |
131 |
ctcattagaaaccaaagggtggcctc |
156 |
Q |
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||| ||||||||||| ||||||| |
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| T |
25861407 |
ttcacatgaaaccaaaggttggcctc |
25861432 |
T |
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