View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8586_high_11 (Length: 250)
Name: NF8586_high_11
Description: NF8586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8586_high_11 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 28696851 - 28696611
Alignment:
| Q |
11 |
taatacttcaattttaaatctactattgattgtcttctatcacaagaaatggttctcaattggttgctttattaattccaagttgtcaccatagtttatt |
110 |
Q |
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| T |
28696851 |
taatacttcaattttaaatctactattgattgtcttctatcacaagaaatggttctcaattggttgctttattaattccaagttgtcaccataatttatt |
28696752 |
T |
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| Q |
111 |
t-atcttatatgttgagcatcaagaggttaaacatgtcttagtttactcatctcttgtagaaaaacataaattgaaattaaagcttgtaagtttcccttt |
209 |
Q |
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| T |
28696751 |
ttatattatatgttgagcatcaagaggttaaacatgtcttagtttactcatctcttgtagaaaaacataaattgaaattaaagcttgtaagtttcccttt |
28696652 |
T |
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| Q |
210 |
tcaattcaatatttattgcttgatcatctatggttgtcaca |
250 |
Q |
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| T |
28696651 |
tcaattcaatatttattgcatgatcatctatggttgtcaca |
28696611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 11 - 134
Target Start/End: Complemental strand, 28691999 - 28691875
Alignment:
| Q |
11 |
taatacttcaattttaaa-tctactattgattgtcttctatcacaagaaatggttctcaattggttgctttattaattccaagttgtcaccatagtttat |
109 |
Q |
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| T |
28691999 |
taatacttcatttttatagtctattattgattggcgtctattacaagaaatggttctcaattggttgcttaattaaatccaagttgtcaccataatttat |
28691900 |
T |
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| Q |
110 |
ttatcttatatgttgagcatcaaga |
134 |
Q |
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| T |
28691899 |
ttataatatatgttgagcatcaaga |
28691875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 119 - 250
Target Start/End: Complemental strand, 28691860 - 28691726
Alignment:
| Q |
119 |
atgttgagcatcaagaggttaaacatgtcttagtttactcatctcttgtagaaa---aacataaattgaaattaaagcttgtaagtttcccttttcaatt |
215 |
Q |
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| T |
28691860 |
atgttgagcatcaagatgttaaacatgtcttagtctattcagctattgtacaaagaaaaaaaaaattgaaatcaaagcctgtaagtttctattttcaatt |
28691761 |
T |
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| Q |
216 |
caatatttattgcttgatcatctatggttgtcaca |
250 |
Q |
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| T |
28691760 |
caatatttactgcatgatcatctatggttgtcaca |
28691726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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