View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8586_high_12 (Length: 249)

Name: NF8586_high_12
Description: NF8586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8586_high_12
NF8586_high_12
[»] chr8 (3 HSPs)
chr8 (20-210)||(21239239-21239427)
chr8 (216-249)||(21238068-21238101)
chr8 (24-88)||(30911384-30911448)
[»] chr2 (4 HSPs)
chr2 (26-75)||(8024799-8024848)
chr2 (27-88)||(8192481-8192542)
chr2 (27-96)||(32526215-32526284)
chr2 (20-88)||(4618808-4618876)
[»] chr5 (2 HSPs)
chr5 (40-88)||(21042668-21042716)
chr5 (27-81)||(36895438-36895492)
[»] chr6 (2 HSPs)
chr6 (27-81)||(3907554-3907608)
chr6 (27-75)||(17149586-17149634)
[»] chr4 (3 HSPs)
chr4 (106-136)||(48992474-48992504)
chr4 (27-80)||(7093390-7093443)
chr4 (26-66)||(19220561-19220601)
[»] chr3 (2 HSPs)
chr3 (26-88)||(50582998-50583060)
chr3 (27-88)||(4252526-4252587)
[»] chr7 (1 HSPs)
chr7 (38-82)||(37056230-37056274)


Alignment Details
Target: chr8 (Bit Score: 142; Significance: 1e-74; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 20 - 210
Target Start/End: Complemental strand, 21239427 - 21239239
Alignment:
Q  20 cagggaaaatcgaacttgaaaccttgaaaggaacacactccaagatcgcaaaccaatcactaagccaactctaaatgtgtagtttacatcacatattaat 119  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  21239427 cagggaaaatcaaacttgaaaccttgaaaggaacacactccaagatcgcaagccaaccactaagccaactctaaatgtgtagtttacatcacatattaat 21239328  T
Q  120 ttcttttgcatagtttatagtgatataatagttgctatgtatattccttnnnnnnntatagttgttatatatattatatttgttaaataga 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||        |||||||||||||||||||| |||||||||||||    
T  21239327 ttcttttgcatagtttatagtgatataatagttgctatgtatatttcttaaaaaa--atagttgttatatatattatgtttgttaaataga 21239239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 216 - 249
Target Start/End: Complemental strand, 21238101 - 21238068
Alignment:
Q  216 ttattattttctttgacaaaaacaaaacaatatt 249  Q
    ||||||||||||||||||||||||||||||||||    
T  21238101 ttattattttctttgacaaaaacaaaacaatatt 21238068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 30911384 - 30911448
Alignment:
Q  24 gaaaatcgaacttgaaaccttgaaaggaacacactccaagatcgcaaaccaatcactaagccaac 88  Q
    ||||||| ||| ||||||||||| |||| || ||||||||||| |||| |||||| || ||||||    
T  30911384 gaaaatcaaacatgaaaccttgagaggagcaaactccaagatctcaaatcaatcattaggccaac 30911448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 8024799 - 8024848
Alignment:
Q  26 aaatcgaacttgaaaccttgaaaggaacacactccaagatcgcaaaccaa 75  Q
    ||||||||||||||||||||| || |||||||||||| ||||||||||||    
T  8024799 aaatcgaacttgaaaccttgagagaaacacactccaacatcgcaaaccaa 8024848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 8192481 - 8192542
Alignment:
Q  27 aatcgaacttgaaaccttgaaaggaacacactccaagatcgcaaaccaatcactaagccaac 88  Q
    |||||||| ||| ||||||| |||| |||||||||||||| ||| |||| ||||| ||||||    
T  8192481 aatcgaacctgagaccttgagaggagcacactccaagatcccaagccaaccactaggccaac 8192542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 96
Target Start/End: Original strand, 32526215 - 32526284
Alignment:
Q  27 aatcgaacttgaaaccttgaaaggaacacactccaagatcgcaaaccaatcactaagccaactctaaatg 96  Q
    |||||||| ||| ||||||| |||| || ||| ||||||| |||| ||| |||||||||||||| |||||    
T  32526215 aatcgaacctgagaccttgagaggagcaaacttcaagatcccaaatcaaccactaagccaactccaaatg 32526284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 4618808 - 4618876
Alignment:
Q  20 cagggaaaatcgaacttgaaaccttgaaaggaacacactccaagatcgcaaaccaatcactaagccaac 88  Q
    ||||| ||||||||| ||||||||||| |||| || ||||||||||  ||| |||| ||||| ||||||    
T  4618808 caggggaaatcgaacctgaaaccttgagaggagcatactccaagattccaagccaaccactaggccaac 4618876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 21042668 - 21042716
Alignment:
Q  40 accttgaaaggaacacactccaagatcgcaaaccaatcactaagccaac 88  Q
    |||||||||||| || ||||||||||| ||||||||||||||| |||||    
T  21042668 accttgaaaggagcaaactccaagatcccaaaccaatcactaaaccaac 21042716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 36895492 - 36895438
Alignment:
Q  27 aatcgaacttgaaaccttgaaaggaacacactccaagatcgcaaaccaatcacta 81  Q
    |||||||| ||||||||||| |||| |||||||||||||| ||| | ||||||||    
T  36895492 aatcgaacatgaaaccttgagaggagcacactccaagatcccaagctaatcacta 36895438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 3907608 - 3907554
Alignment:
Q  27 aatcgaacttgaaaccttgaaaggaacacactccaagatcgcaaaccaatcacta 81  Q
    |||||||||||||| ||||| |||| ||||| |||||||| |||||||| |||||    
T  3907608 aatcgaacttgaaatcttgagaggagcacaccccaagatcccaaaccaaccacta 3907554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 17149586 - 17149634
Alignment:
Q  27 aatcgaacttgaaaccttgaaaggaacacactccaagatcgcaaaccaa 75  Q
    |||||||| ||| ||||||| |||| |||||||||||||| ||||||||    
T  17149586 aatcgaacctgagaccttgagaggagcacactccaagatcccaaaccaa 17149634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 136
Target Start/End: Original strand, 48992474 - 48992504
Alignment:
Q  106 catcacatattaatttcttttgcatagttta 136  Q
    |||||||||||||||||||||||||||||||    
T  48992474 catcacatattaatttcttttgcatagttta 48992504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 80
Target Start/End: Complemental strand, 7093443 - 7093390
Alignment:
Q  27 aatcgaacttgaaaccttgaaaggaacacactccaagatcgcaaaccaatcact 80  Q
    |||||||| | |||||||||||||| |||||||||||||| ||| |||| ||||    
T  7093443 aatcgaacctaaaaccttgaaaggagcacactccaagatcccaagccaaccact 7093390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 19220601 - 19220561
Alignment:
Q  26 aaatcgaacttgaaaccttgaaaggaacacactccaagatc 66  Q
    ||||||||| ||||||||||| |||| ||||||||||||||    
T  19220601 aaatcgaacctgaaaccttgagaggagcacactccaagatc 19220561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 50583060 - 50582998
Alignment:
Q  26 aaatcgaacttgaaaccttgaaaggaacacactccaagatcgcaaaccaatcactaagccaac 88  Q
    ||||||||| ||||||||| | |||| || ||||||||||| |||||||| ||||| ||||||    
T  50583060 aaatcgaacctgaaaccttaagaggagcaaactccaagatcccaaaccaaccactaggccaac 50582998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 4252526 - 4252587
Alignment:
Q  27 aatcgaacttgaaaccttgaaaggaacacactccaagatcgcaaaccaatcactaagccaac 88  Q
    |||| ||||||| ||||||| |||| |||||||||||||| ||| |||| ||||| ||||||    
T  4252526 aatcaaacttgagaccttgagaggagcacactccaagatctcaagccaaccactaggccaac 4252587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 82
Target Start/End: Complemental strand, 37056274 - 37056230
Alignment:
Q  38 aaaccttgaaaggaacacactccaagatcgcaaaccaatcactaa 82  Q
    ||||||||| |||| |||||||||||||| |||||||| ||||||    
T  37056274 aaaccttgagaggagcacactccaagatcacaaaccaaccactaa 37056230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University