View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8586_low_1 (Length: 661)

Name: NF8586_low_1
Description: NF8586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8586_low_1
NF8586_low_1
[»] chr3 (1 HSPs)
chr3 (1-642)||(38617702-38618345)


Alignment Details
Target: chr3 (Bit Score: 509; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 1 - 642
Target Start/End: Complemental strand, 38618345 - 38617702
Alignment:
Q  1 ctcttagagtaatcatcacttgatcatgatcatataatcttggtagaaatcgcatttctcccccaaactccttaaagactccactatataggaccttagc 100  Q
    |||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38618345 ctcttagagtaatcatcatttgatcaagatcataaaatcttggtagaaatcgcatttctcccccaaactccttaaagactccactatataggaccttagc 38618246  T
Q  101 actc--gagaagggtatgaaccattttgactcctctcactcgccttgatctcccactagctagagcttctaagtgattgctaatacaacaaccctgccga 198  Q
    | ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  38618245 attcaagagaagggtatgaaccattttgactcctctcactcgccttgatctcccactagctagagcttctaagtgattgctaatacaacaatcctgccga 38618146  T
Q  199 gaaactactttgccgtccctcatcacgctcaaccaatgtcgaacatcgttagagacccgtcttggaccaattattatttttcaatatccccttgatcatt 298  Q
    |||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  38618145 gaaactactttgtcgtccctcatcacgttcaaccaatttcgaacatcgttagagacccatcttggaccaattattatttttcattatccccttgatcatt 38618046  T
Q  299 attaatgtgtccnnnnnnnnnnnnnnnnnnnnnnnnatataaagaagtgtgcaaaactcaagtagatatctaaaatgagacggaaggagtacatttatgt 398  Q
    ||||||||||||                        |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  38618045 attaatgtgtccttttcaattttttattttacttttatataaagaagtgtgcaaaactcaagtagatatctaaaatgaaacggaaggagtacatttatgt 38617946  T
Q  399 gttcatatctataaacaacatataacatgagatggagaagataatttagtgtgttatacaaattcatattctcaatgtatatatcttttcatttttatgc 498  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  38617945 gttcatatctataaacaacatataacatgagatggagaagataatttagtgtgttatacaaattcatattctcaatgtatgtatcttttcatttttatgc 38617846  T
Q  499 cgtctttcttctttgtcaagatacggctcgactttgctctcttgctagtcacaagaataaggtagaacgttttattcaataggaactccaaattaaattt 598  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38617845 cgtctttcgtctttgtcaagatacggctcgactttgctctcttgctagtcacaagaataaggtagaacgttttattcaataggaactccaaattaaattt 38617746  T
Q  599 agtgcggttttctttgaacctaaataaacttcttcttttcttta 642  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  38617745 agtgcggttttctttgaacctaaataaacttcttcttttcttta 38617702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University