View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8586_low_10 (Length: 382)
Name: NF8586_low_10
Description: NF8586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8586_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 177; Significance: 3e-95; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 167 - 363
Target Start/End: Original strand, 51997153 - 51997349
Alignment:
| Q |
167 |
aattggttggtaatacctcataatgtatgaggacgaaaccctaaacagacatgatggatataggtttagaggtgcaagaaaatgaggtagtaaatcggca |
266 |
Q |
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| T |
51997153 |
aattggttggtaattcctcataatgtatgaggacgaaacactaaacagacatgatggatatatgattagaggtgcaagaaaatgaggtagtaaatcggca |
51997252 |
T |
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| Q |
267 |
catgtgagtaataaaacgatattattattgactaaaccaacaatcatttccatttttcaaacaaaataaattagaaggctttacgtgacatgagttt |
363 |
Q |
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| T |
51997253 |
catgtgagtaataaaacgacattattattgactaaaccaacaatcatttccatttttcaaacaaaataaattagaaggctttacgtgacatgagttt |
51997349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 51996912 - 51997057
Alignment:
| Q |
1 |
tcatatttgacagtattgaataccttgttttacagttagcatgcatgaggttataatttaaaatctcatgagatatctcaataatggatatctccattaa |
100 |
Q |
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| T |
51996912 |
tcatatttgacagtattgaatacctcgttttacagttagcatgcatgaggttataatttaaaatctcatgagatatctcaataatggatatctccattaa |
51997011 |
T |
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| Q |
101 |
aatatctcacacaaggtaaatttttcttccttactgctcttattaa |
146 |
Q |
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| T |
51997012 |
aatatctcacacaaggtaaatttttcttccttactgctcttattaa |
51997057 |
T |
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