View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8586_low_17 (Length: 314)

Name: NF8586_low_17
Description: NF8586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8586_low_17
NF8586_low_17
[»] chr5 (1 HSPs)
chr5 (12-303)||(5254446-5254727)
[»] chr8 (1 HSPs)
chr8 (13-282)||(6647846-6648107)
[»] chr7 (6 HSPs)
chr7 (13-282)||(4469598-4469858)
chr7 (45-282)||(38690952-38691179)
chr7 (13-184)||(39669515-39669685)
chr7 (219-282)||(39669443-39669506)
chr7 (51-101)||(4468349-4468399)
chr7 (226-277)||(4468526-4468577)
[»] chr1 (4 HSPs)
chr1 (44-282)||(20133787-20134016)
chr1 (13-184)||(24523691-24523860)
chr1 (219-282)||(24523869-24523932)
chr1 (12-90)||(20142132-20142209)
[»] chr6 (1 HSPs)
chr6 (44-277)||(11144106-11144338)
[»] chr2 (1 HSPs)
chr2 (13-282)||(13859575-13859836)
[»] chr3 (1 HSPs)
chr3 (44-282)||(7551350-7551581)
[»] chr4 (1 HSPs)
chr4 (13-145)||(3993294-3993426)
[»] scaffold0136 (2 HSPs)
scaffold0136 (17-184)||(40717-40879)
scaffold0136 (219-282)||(40888-40951)
[»] scaffold0416 (1 HSPs)
scaffold0416 (44-101)||(4368-4425)


Alignment Details
Target: chr5 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 12 - 303
Target Start/End: Complemental strand, 5254727 - 5254446
Alignment:
Q  12 gatggacatcatagtttgttttctannnnnnnggtagtgctattttctctatttatttggcaatataaacaccgatccccatatatttttgtttttgttt 111  Q
    |||||||||||||||||||||||||        ||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||    ||||||    
T  5254727 gatggacatcatagtttgttttctattttttttgtagtgctattttctctatttatttggtaatataaacaacgatccccatatgttttt----ttgttt 5254632  T
Q  112 atgttaactatgtttttctaaacaaacttttgctnnnnnnnnttctctttaaatttgtaccaccaaagaaaaga-aaaaccccatctaacgtttgtcttt 210  Q
     ||||||||||||||||||||| |||||||||||        ||||| |||||||||| ||||||||||||||| |||||| ||||||||||||||||||    
T  5254631 ttgttaactatgtttttctaaagaaacttttgctaaaaaaatttctcattaaatttgtgccaccaaagaaaagaaaaaacctcatctaacgtttgtcttt 5254532  T
Q  211 tgtaaccaaactaactctgtctacatatgtgccactttatgccaaactaatcatctctcaactctctctatattagatcttttaacatgatgt 303  Q
     ||     ||||||||||||||||||||||||||||||||||||||||||| |||||||||  ||||||||||||||||||||||||||||||    
T  5254531 ggt-----aactaactctgtctacatatgtgccactttatgccaaactaataatctctcaa--ctctctatattagatcttttaacatgatgt 5254446  T

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Target: chr8 (Bit Score: 141; Significance: 6e-74; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 13 - 282
Target Start/End: Complemental strand, 6648107 - 6647846
Alignment:
Q  13 atggacatcatagtttgttttctannnnnnnggtagtgctattttctctatttatttggcaatataaacaccgatccccatatatttttgtttttgttta 112  Q
    ||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||    ||| |||| ||||     
T  6648107 atggacatcatagtttgttttctatttttttggtagtgctattttctctatttatttggcaatataaacaccgatccccata----ttttttttagtttt 6648012  T
Q  113 tgttaactatgtttttctaaacaaacttttgctnnnnnnnnttctctttaaatttgtaccaccaaagaaaag-aaaaaccccatctaacgtttgtctttt 211  Q
    |||||||||||||||||||||||||||||||||        ||||| |||||||||| |||||||||||||| ||||||  ||||||||||||||||||     
T  6648011 tgttaactatgtttttctaaacaaacttttgctaaaaaaaattctcattaaatttgtgccaccaaagaaaagaaaaaacatcatctaacgtttgtctttg 6647912  T
Q  212 gtaaccaaactaactctgtctacatatgtgccactttatgccaaactaatcatctctcaactctctctata 282  Q
    ||     |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  6647911 gt-----aactaactctgtctacatatgtgccactttatgccaaactaatcatctttcaactctctatata 6647846  T

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Target: chr7 (Bit Score: 136; Significance: 6e-71; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 13 - 282
Target Start/End: Original strand, 4469598 - 4469858
Alignment:
Q  13 atggacatcatagtttgttttctannnnnnnggtagtgctattttctctatttatttggcaatataaacaccgatccccatatatttttgtttttgttta 112  Q
    ||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||| ||||||||  |    |||||||||     
T  4469598 atggacatcatagtttgttttctatttttttggtagtgctattttctctatttatttggcaatataaacaccgaaccccatatgat----tttttgtttt 4469693  T
Q  113 tgttaactatgtttttctaaacaaacttttgctnnnnnnnnttctctttaaatttgtaccaccaaagaaaag-aaaaaccccatctaacgtttgtctttt 211  Q
    |||||||||||||||||||||||||||||||||        ||||| |||||||||| |||||||||||||| ||||||| ||||||||||||||||||     
T  4469694 tgttaactatgtttttctaaacaaacttttgct-aaaaaaattctcattaaatttgtgccaccaaagaaaagaaaaaacctcatctaacgtttgtctttg 4469792  T
Q  212 gtaaccaaactaactctgtctacatatgtgccactttatgccaaactaatcatctctcaactctctctata 282  Q
    ||     |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  4469793 gt-----aactaactatgtctacatatgtgccactttatgccaaactaatcatctctcaactctctatata 4469858  T

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Target: chr7; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 45 - 282
Target Start/End: Original strand, 38690952 - 38691179
Alignment:
Q  45 gtagtgctattttctctatttatttggcaatataaacaccgatccccatatatttttgtttttgtttatgttaactatgtttttctaaacaaacttttgc 144  Q
    |||||| |||||||||||||||||||||||||||| ||||||| ||||||| |||   ||||||||| |||||||||||||||||||||||||||||||     
T  38690952 gtagtgttattttctctatttatttggcaatataaccaccgat-cccatatgttt---tttttgtttttgttaactatgtttttctaaacaaacttttgt 38691047  T
Q  145 tnnnnnnnnttctctttaaatttgtaccaccaaagaaaagaaaaaccccatctaacgtttgtcttttgtaaccaaactaactctgtctacatatgtgcca 244  Q
    |        ||||| |||||||||| ||| ||||||||| ||||| | |||||||||||||||||| ||     || ||||||||||||||| |||| ||    
T  38691048 tgaaaaaaattctcattaaatttgtgccaacaaagaaaa-aaaaaactcatctaacgtttgtctttggt-----aattaactctgtctacatctgtgtca 38691141  T
Q  245 ctttatgccaaactaatcatctctcaactctctctata 282  Q
    ||||||| ||||| ||||||||||||||||||| ||||    
T  38691142 ctttatgtcaaacaaatcatctctcaactctctatata 38691179  T

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Target: chr7; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 13 - 184
Target Start/End: Complemental strand, 39669685 - 39669515
Alignment:
Q  13 atggacatcatagtttgttttctannnnnnnggtagtgctattttctctatttatttggcaatataaacaccgatccccatatatttttgtttttgttta 112  Q
    |||||||||||||||| |||||||       |||||||||||||| |||||||||||||||||||||||||||||||||||||  |||| |||||||||     
T  39669685 atggacatcatagtttattttctatttttttggtagtgctattttttctatttatttggcaatataaacaccgatccccatatgatttt-tttttgtttt 39669587  T
Q  113 tgttaactatgtttttctaaacaaacttttgctnnnnnnnnttctctttaaatttgtaccaccaaagaaaag 184  Q
    |||||||||||||||||||||||||||||||||        ||||| |||||||||| ||||||||||||||    
T  39669586 tgttaactatgtttttctaaacaaacttttgctaaaaaaaattctcattaaatttgtgccaccaaagaaaag 39669515  T

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Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 219 - 282
Target Start/End: Complemental strand, 39669506 - 39669443
Alignment:
Q  219 aactaactctgtctacatatgtgccactttatgccaaactaatcatctctcaactctctctata 282  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||| ||||    
T  39669506 aactaactctgtctacatatgtgccactttatgtcaaactaatcatctttcaaatctctatata 39669443  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 51 - 101
Target Start/End: Original strand, 4468349 - 4468399
Alignment:
Q  51 ctattttctctatttatttggcaatataaacaccgatccccatatattttt 101  Q
    |||||||||||||||||||||||||||||||| | |||||||||| |||||    
T  4468349 ctattttctctatttatttggcaatataaacatcaatccccatattttttt 4468399  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 277
Target Start/End: Original strand, 4468526 - 4468577
Alignment:
Q  226 tctgtctacatatgtgccactttatgccaaactaatcatctctcaactctct 277  Q
    ||||||||||| ||||||||||||||||||| ||||| |||||||| |||||    
T  4468526 tctgtctacatttgtgccactttatgccaaagtaatcctctctcaaatctct 4468577  T

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Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 44 - 282
Target Start/End: Original strand, 20133787 - 20134016
Alignment:
Q  44 ggtagtgctattttctctatttatttggcaatataaacaccgatccccatatatttttgtttttgtttatgttaactatgtttttctaaacaaacttttg 143  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||    |||||| |||||||||||||||||||||||||||||||    
T  20133787 ggtagtgctattttctctatttatttggaaatataatcaccgatccccatatgttttt----ttgtttttgttaactatgtttttctaaacaaacttttg 20133882  T
Q  144 ctnnnnnnnnttctctttaaatttgtaccaccaaagaaaagaaaaaccccatctaacgtttgtcttttgtaaccaaactaactctgtctacatatgtgcc 243  Q
    ||        ||||| |||||||||| ||||||||||||| ||||||| |||||||||||||||||| ||     |||||||||||||||||| ||||||    
T  20133883 ctaaaaaaatttctcattaaatttgtgccaccaaagaaaaaaaaaacctcatctaacgtttgtctttggt-----aactaactctgtctacatctgtgcc 20133977  T
Q  244 actttatgccaaactaatcatctctcaactctctctata 282  Q
    ||||||||||||||||||||| |||||||||||| ||||    
T  20133978 actttatgccaaactaatcatttctcaactctctatata 20134016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 13 - 184
Target Start/End: Original strand, 24523691 - 24523860
Alignment:
Q  13 atggacatcatagtttgttttctannnnnnnggtagtgctattttctctatttatttggcaatataaacaccgatccccatatatttttgtttttgttta 112  Q
    |||||| |||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||     
T  24523691 atggacgtcatagtttgttttctatttttttggtagtgctattttctctatttatttggcaatataaacaccgatccccatatgtttt--tttttgtttt 24523788  T
Q  113 tgttaactatgtttttctaaacaaacttttgctnnnnnnnnttctctttaaatttgtaccaccaaagaaaag 184  Q
    |||||||||||||||||||||||||||||||||        ||||| |||||||||| ||||||||||||||    
T  24523789 tgttaactatgtttttctaaacaaacttttgctaaaaaagattctcattaaatttgtgccaccaaagaaaag 24523860  T

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Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 219 - 282
Target Start/End: Original strand, 24523869 - 24523932
Alignment:
Q  219 aactaactctgtctacatatgtgccactttatgccaaactaatcatctctcaactctctctata 282  Q
    |||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||| ||||    
T  24523869 aactaactctgtctacatatgtgccattttatgtcaaactaatcatctcttaactctctatata 24523932  T

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Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 90
Target Start/End: Original strand, 20142132 - 20142209
Alignment:
Q  12 gatggacatcatagtttgttttctannnnnnnggtagtgctattttctctatttatttggcaatataaacaccgatccc 90  Q
    |||||||||||||||||||||||||       |||||||||||||| ||||||||||||||||||||||||| ||||||    
T  20142132 gatggacatcatagtttgttttctatttttttggtagtgctatttt-tctatttatttggcaatataaacacggatccc 20142209  T

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Target: chr6 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 44 - 277
Target Start/End: Original strand, 11144106 - 11144338
Alignment:
Q  44 ggtagtgctattttctctatttatttggcaatataaacaccgatccccatat-atttttgtttttgtttatgttaactatgtttttctaaacaaactttt 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||||| ||||||||||||||||||||||||||||||    
T  11144106 ggtagtgctattttctctatttatttggcaatataaacaccgatccccatatgttttttttttttgtttttgttaactatgtttttctaaacaaactttt 11144205  T
Q  143 gc--tnnnnnnnnttctctttaaatttgtaccaccaaagaaaag-aaaaaccccatctaacgtttgtcttttgtaaccaaactaactctgtctacatatg 239  Q
    ||           ||||| |||||||| |||||| ||||||||| ||||| | |||||||||||||||||| ||     |||||||||||||||||||||    
T  11144206 gcaaaaaaaaaaattctcattaaatttataccactaaagaaaagaaaaaatctcatctaacgtttgtctttggt-----aactaactctgtctacatatg 11144300  T
Q  240 tgccactttatgccaaactaatcatctctcaactctct 277  Q
    ||||||||||||||||||||||||||||||||||||||    
T  11144301 tgccactttatgccaaactaatcatctctcaactctct 11144338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 13 - 282
Target Start/End: Complemental strand, 13859836 - 13859575
Alignment:
Q  13 atggacatcatagtttgttttctannnnnnnggtagtgctattttctctatttatttggcaatataaacaccgatccccatatatttttgtttttgttta 112  Q
    ||||||||||||||||||||||||       |||||||||||||||| ||||||||||||||||||||||| ||||||||||    ||| |||| ||||     
T  13859836 atggacatcatagtttgttttctatttttttggtagtgctattttctatatttatttggcaatataaacactgatccccata----ttttttttagtttt 13859741  T
Q  113 tgttaactatgtttttctaaacaaacttttgctnnnnnnnnttctctttaaatttgtaccaccaaagaaaag-aaaaaccccatctaacgtttgtctttt 211  Q
    |||||||||||||||| ||||||||||||||||        ||||| |||||||||| |||||||||||||| ||||||| ||| ||||||||||||||     
T  13859740 tgttaactatgtttttgtaaacaaacttttgctaaaaaaaattctcattaaatttgtgccaccaaagaaaagaaaaaacctcatataacgtttgtctttg 13859641  T
Q  212 gtaaccaaactaactctgtctacatatgtgccactttatgccaaactaatcatctctcaactctctctata 282  Q
     |     ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  13859640 at-----aactaactctgtctatatatgtgccactttatgccaaactaatcatctctcaactctctatata 13859575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 44 - 282
Target Start/End: Complemental strand, 7551581 - 7551350
Alignment:
Q  44 ggtagtgctattttctctatttatttggcaatataaacaccgatccccatatatttttgtttttgtttatgttaactatgtttttctaaacaaacttttg 143  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||   ||||||||| |||||||||||||||||||||||||||||||    
T  7551581 ggtagtgttattttctctatttatttggcaatataaccaccgatccccatatgttt---tttttgtttttgttaactatgtttttctaaacaaacttttg 7551485  T
Q  144 c--tnnnnnnnnttctctttaaatttgtaccaccaaagaaaagaaaaaccccatctaacgtttgtcttttgtaaccaaactaactctgtctacatatgtg 241  Q
    |           ||||| |||||||||| ||| ||||||||| |||||   |||||||||||||||||| ||     |||||||||||||||||| ||||    
T  7551484 ccaaaaaaaaaattctcattaaatttgtgccaacaaagaaaa-aaaaatatcatctaacgtttgtctttggt-----aactaactctgtctacatctgtg 7551391  T
Q  242 ccactttatgccaaactaatcatctctcaactctctctata 282  Q
     ||||||||| ||||| ||||||||||||||||||| ||||    
T  7551390 tcactttatgtcaaacaaatcatctctcaactctctatata 7551350  T

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Target: chr4 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 13 - 145
Target Start/End: Original strand, 3993294 - 3993426
Alignment:
Q  13 atggacatcatagtttgttttctannnnnnnggtagtgctattttctctatttatttggcaatataaacaccgatccccatatatttttgtttttgttta 112  Q
    ||||||||||||||||||||||||        |||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||  ||||||||     
T  3993294 atggacatcatagtttgttttctatttttttcgtagcgctattttctctatttatttagcaatataaacaccgatccccatatgttttttgttttgtttt 3993393  T
Q  113 tgttaactatgtttttctaaacaaacttttgct 145  Q
    |||||||||||||||||||||||||||||||||    
T  3993394 tgttaactatgtttttctaaacaaacttttgct 3993426  T

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Target: scaffold0136 (Bit Score: 79; Significance: 6e-37; HSPs: 2)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 17 - 184
Target Start/End: Original strand, 40717 - 40879
Alignment:
Q  17 acatcatagtttgttttctannnnnnnggtagtgctattttctctatttatttggcaatataaacaccgatccccatatatttttgtttttgtttatgtt 116  Q
    ||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||| ||||| || || |||||     ||||    
T  40717 acatcatagtttgttttctatttttttggtagtgctattttctctatttatttggcaatataaacaccgatcctcatattttatttttttt-----tgtt 40811  T
Q  117 aactatgtttttctaaacaaacttttgctnnnnnnnnttctctttaaatttgtaccaccaaagaaaag 184  Q
    |||||||||||||||||||||||||||||        ||||| |||||||||| ||||||||||||||    
T  40812 aactatgtttttctaaacaaacttttgctaaaaaaaattctcattaaatttgtgccaccaaagaaaag 40879  T

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Target: scaffold0136; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 219 - 282
Target Start/End: Original strand, 40888 - 40951
Alignment:
Q  219 aactaactctgtctacatatgtgccactttatgccaaactaatcatctctcaactctctctata 282  Q
    |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  40888 aactaactttgtctacatatgtgccactttatgtcaaactaatcatctctcaactctctatata 40951  T

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Target: scaffold0416 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0416
Description:

Target: scaffold0416; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 44 - 101
Target Start/End: Original strand, 4368 - 4425
Alignment:
Q  44 ggtagtgctattttctctatttatttggcaatataaacaccgatccccatatattttt 101  Q
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T  4368 ggtagtgttattttctctatttatttggcaatataaccaccgatccccatatgttttt 4425  T

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