View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8586_low_21 (Length: 245)
Name: NF8586_low_21
Description: NF8586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8586_low_21 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 39152077 - 39151844
Alignment:
| Q |
1 |
ttaccactcactaattctctttttaaattgcatcacatcctatcatgttacatcacattttacaatctcctccgatccaacacatgaaaagttcaacaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
39152077 |
ttaccactcactaattctctttttaaattgcatcacatcctatcatgttacatcacattttacaatctcctccgatccaacatatgaaaagttcaacaaa |
39151978 |
T |
|
| Q |
101 |
tggaaataggaatgatttttaatacatgtaaaagtcaattaaatgtgtctaaaataaattgctttatatatactgcaaaagtgaaaataatacaacnnnn |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39151977 |
tggaaataggaatgatttttaatacatgtaaaagtcaatgaaatgtgtctaaaataaattgctttatatatactgcaaaagtgaaaataatacaactttt |
39151878 |
T |
|
| Q |
201 |
nnnaagtgggattcccttcttgctttgatgtcca |
234 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |
|
|
| T |
39151877 |
tttaagtgggattcccttcttgctttaatgtcca |
39151844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University