View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8586_low_25 (Length: 238)
Name: NF8586_low_25
Description: NF8586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8586_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 28696510 - 28696284
Alignment:
| Q |
1 |
aaaatggtgtcacaaatgtcctattgcgaacaatctagtatcaatgatgtttcagtcaatgattcaaattcaaagctaagtatcccaacaattgacctaa |
100 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
28696510 |
aaaatggtgtcacaaatgtcctattgtgaacaatctagtatcaatgatgtttcagtcaatgattcaaattcaaagctaagtatcccaccaattgacctaa |
28696411 |
T |
|
| Q |
101 |
caggaatccatgatgatcttgttttgaaagatgaagttgtgagaaaagttcaaaatgcaagtgagaattggggattctttcaagtaataaatcatggaat |
200 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28696410 |
caggaatccataatgatcttgttttgaaagatgaagttgtgagaaaagttcaaaatgcaagtgagaattggggattctttcaagtaataaatcatggaat |
28696311 |
T |
|
| Q |
201 |
tccaacacaaattttggatgagatgat |
227 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
28696310 |
tccaacacaaattttggatgagatgat |
28696284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 28691625 - 28691399
Alignment:
| Q |
1 |
aaaatggtgtcacaaatgtcctattgcgaacaatctagtatcaatgatgtttcagtcaatgattcaaattcaaagctaagtatcccaacaattgacctaa |
100 |
Q |
| |
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||||||||||||||||||| |||||| |||||||||||||| |||||| ||||||||||||||||||||||||| | |||||||| ||||||||||||| |
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| T |
28691625 |
aaaatggtgtcacaaatgttctattgtgaacaatctagtatgaatgatttttcagtcaatgattcaaattcaaatgttagtatccctacaattgacctaa |
28691526 |
T |
|
| Q |
101 |
caggaatccatgatgatcttgttttgaaagatgaagttgtgagaaaagttcaaaatgcaagtgagaattggggattctttcaagtaataaatcatggaat |
200 |
Q |
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||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||| |
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| T |
28691525 |
caggaatccatgatgatcttgttttgagagatgaagctgtgagaaaagttgaaaatgcatgtgagaagtggggattctttcaagtaataaatcatggaat |
28691426 |
T |
|
| Q |
201 |
tccaacacaaattttggatgagatgat |
227 |
Q |
| |
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| || | || |||||||||||||||| |
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| T |
28691425 |
ttcagctcatgttttggatgagatgat |
28691399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 16 - 227
Target Start/End: Complemental strand, 28670990 - 28670779
Alignment:
| Q |
16 |
atgtcctattgcgaacaatctagtatcaatgatgtttcagtcaatgattcaaattcaaagctaagtatcccaacaattgacctaacaggaatccatgatg |
115 |
Q |
| |
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|||| |||||| |||||||||| ||||||| ||| |||||| ||||| |||||||||||||| ||| |||| ||||||||| |||||||||||||||||| |
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| T |
28670990 |
atgttctattgtgaacaatctaatatcaatcatggttcagtaaatgaatcaaattcaaagcttagtgtccctacaattgacttaacaggaatccatgatg |
28670891 |
T |
|
| Q |
116 |
atcttgttttgaaagatgaagttgtgagaaaagttcaaaatgcaagtgagaattggggattctttcaagtaataaatcatggaattccaacacaaatttt |
215 |
Q |
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||| |||||||| |||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
28670890 |
atcctgttttgagagatgaagttgtaagaaaagttcgaaatgcaagtgagaaatggggattctttcaagtaataaatcatggaattccaacacagatttt |
28670791 |
T |
|
| Q |
216 |
ggatgagatgat |
227 |
Q |
| |
|
|||||||||||| |
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| T |
28670790 |
ggatgagatgat |
28670779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 11 - 227
Target Start/End: Complemental strand, 28642412 - 28642196
Alignment:
| Q |
11 |
cacaaatgtcctattgcgaacaatctagtatcaatgatgtttcagtcaatgattcaaattcaaagctaagtatcccaacaattgacctaacaggaatcca |
110 |
Q |
| |
|
|||| |||| |||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||| ||| ||||||||| |
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| T |
28642412 |
cacacatgttctattgtgaacaatctagtatcaatgatgtttcagtgaatgaatcaaattcaaagctaagtatccctacaattgacttaaaaggaatcca |
28642313 |
T |
|
| Q |
111 |
tgatgatcttgttttgaaagatgaagttgtgagaaaagttcaaaatgcaagtgagaattggggattctttcaagtaataaatcatggaattccaacacaa |
210 |
Q |
| |
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|||||||| || ||||| |||||||||||||||| || || |||||||| ||||||| |||||||||||||||||||||||||||||||||||| || |
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| T |
28642312 |
tgatgatcctgctttgagagatgaagttgtgagacaacttgaaaatgcatgtgagaaatggggattctttcaagtaataaatcatggaattccagttcat |
28642213 |
T |
|
| Q |
211 |
attttggatgagatgat |
227 |
Q |
| |
|
|||||||||||||||| |
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| T |
28642212 |
gttttggatgagatgat |
28642196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 23 - 227
Target Start/End: Complemental strand, 28675127 - 28674923
Alignment:
| Q |
23 |
attgcgaacaatctagtatcaatgatgtttcagtcaatgattcaaattcaaagctaagtatcccaacaattgacctaacaggaatccatgatgatcttgt |
122 |
Q |
| |
|
|||| |||||||||| |||||||||| | ||| ||| ||| ||||||| |||||| || ||||| ||||||||| ||||||||||||| ||||||| | | |
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| T |
28675127 |
attgtgaacaatctaatatcaatgatctctcaatcagtgaatcaaatttaaagcttagcatccctacaattgacttaacaggaatccacgatgatcctct |
28675028 |
T |
|
| Q |
123 |
tttgaaagatgaagttgtgagaaaagttcaaaatgcaagtgagaattggggattctttcaagtaataaatcatggaattccaacacaaattttggatgag |
222 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
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| T |
28675027 |
tttgagagatgaagttgtgagaaaagttcaaaatgcaagtgagaaatggggattctttcaagtgataaatcatggaattccaacacatattttggatgag |
28674928 |
T |
|
| Q |
223 |
atgat |
227 |
Q |
| |
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||||| |
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| T |
28674927 |
atgat |
28674923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 16 - 204
Target Start/End: Complemental strand, 28651268 - 28651080
Alignment:
| Q |
16 |
atgtcctattgcgaacaatctagtatcaatgatgtttcagtcaatgattcaaattcaaagctaagtatcccaacaattgacctaacaggaatccatgatg |
115 |
Q |
| |
|
|||| |||||| ||||||||| |||||| ||| | ||| || ||| | |||| ||||||| |||||||| ||||||||| ||| |||||||||||||| |
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| T |
28651268 |
atgttctattgtgaacaatctgatatcaacaatggtgcagccagtgaattaaatccaaagcttagtatccctacaattgacttaaaaggaatccatgatg |
28651169 |
T |
|
| Q |
116 |
atcttgttttgaaagatgaagttgtgagaaaagttcaaaatgcaagtgagaattggggattctttcaagtaataaatcatggaattcca |
204 |
Q |
| |
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||| || ||||| |||||||||||||||| || || |||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
28651168 |
atcctgctttgagagatgaagttgtgagacaacttgaaaatgcatgtgagaaatggggattctttcaagtaataaatcatggaattcca |
28651080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 32 - 167
Target Start/End: Complemental strand, 28741649 - 28741514
Alignment:
| Q |
32 |
aatctagtatcaatgatgtttcagtcaatgattcaaattcaaagctaagtatcccaacaattgacctaacaggaatccatgatgatcttgttttgaaaga |
131 |
Q |
| |
|
|||||| |||||| ||||||||| ||||||| | |||||||||| | ||||||| | |||||| || ||||||||||||||||||||||||||| ||| |
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| T |
28741649 |
aatctaatatcaacgatgtttcattcaatgaatgaaattcaaagattagtatccgtagaattgatttaccaggaatccatgatgatcttgttttgagaga |
28741550 |
T |
|
| Q |
132 |
tgaagttgtgagaaaagttcaaaatgcaagtgagaa |
167 |
Q |
| |
|
| |||||||||||||||||||||| || ||||||| |
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|
| T |
28741549 |
tacagttgtgagaaaagttcaaaattcatgtgagaa |
28741514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 32 - 125
Target Start/End: Complemental strand, 28733457 - 28733364
Alignment:
| Q |
32 |
aatctagtatcaatgatgtttcagtcaatgattcaaattcaaagctaagtatcccaacaattgacctaacaggaatccatgatgatcttgtttt |
125 |
Q |
| |
|
|||||| |||||| ||||||||||||||||| | |||||||||| | |||||||| | |||||| || |||||||||||||||||| |||||| |
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| T |
28733457 |
aatctaatatcaacgatgtttcagtcaatgaataaaattcaaagattagtatccctagaattgatttaccaggaatccatgatgatcctgtttt |
28733364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 102 - 227
Target Start/End: Complemental strand, 28717733 - 28717602
Alignment:
| Q |
102 |
aggaatccatgatgatcttgttttgaaagatgaagttgtgagaaaagttcaaaatgcaagtgagaattggggattcttt------caagtaataaatcat |
195 |
Q |
| |
|
|||||||||||||| || |||||||| ||| ||||||||||||| |||||||||||| |||||| || || ||| ||||||||||||||| |
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| T |
28717733 |
aggaatccatgatggtcctgttttgagagacaaagttgtgagaaaggttcaaaatgcatttgagaagaggtttttttttttttttcaagtaataaatcat |
28717634 |
T |
|
| Q |
196 |
ggaattccaacacaaattttggatgagatgat |
227 |
Q |
| |
|
|||||| |||| || |||||||||||||||| |
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|
| T |
28717633 |
ggaatttcaactcatgttttggatgagatgat |
28717602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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