View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8586_low_28 (Length: 230)
Name: NF8586_low_28
Description: NF8586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8586_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 531422 - 531213
Alignment:
| Q |
1 |
caatcaacaacatgacaatcaggaattccccatatgcgcacttttccatctattgatccgctaatgaaataatcatcatccacaggattgaattgtatgc |
100 |
Q |
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| T |
531422 |
caatcaacaacatgacaatcaggaattccccatatgcgcacttttccatctattgatccgctaatgaaataatcatcatccacaggattgaattgtatgc |
531323 |
T |
|
| Q |
101 |
atgtcactgtcaaacattaacatatgaagatacaattagtgaagaaactcaaagtgataccaaatcaagaagttaaagctaaaaactagaatacatagca |
200 |
Q |
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| T |
531322 |
atgtcactgtcaaacattaacatatgaagatacaattagtgaagaaactcaaagtgataccaaatcaagaagttaaagctaaaaactagaatacatagca |
531223 |
T |
|
| Q |
201 |
agaacagaaa |
210 |
Q |
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|||||||||| |
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| T |
531222 |
agaacagaaa |
531213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 41861531 - 41861638
Alignment:
| Q |
1 |
caatcaacaacatgacaatcaggaattccccatatgcgcacttttccatctattgatccgctaatgaaataatcatcatccacaggattgaattgtatgc |
100 |
Q |
| |
|
||||||||||| ||| |||| ||||| ||| |||||||| ||||| ||||| |||||||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
41861531 |
caatcaacaacctgagaatcgggaatcgtccagatgcgcacctttccgtctatggatccgctaatgaaataatcttcatcaacaggattgaattgtatgc |
41861630 |
T |
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| Q |
101 |
atgtcact |
108 |
Q |
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|||||||| |
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| T |
41861631 |
atgtcact |
41861638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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