View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8586_low_3 (Length: 518)
Name: NF8586_low_3
Description: NF8586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8586_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 424; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 16 - 507
Target Start/End: Original strand, 21705988 - 21706478
Alignment:
| Q |
16 |
acatcattcttctcacaaataccacaaccacatcatgcttcctcaactgaaagtactcaaactccatttccttcacaattttattgggatatgtcccgaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||| |||||||||||||||||| |
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| T |
21705988 |
acatcattcttctcacaaataccacaaccacatcatgcttcctcaactgaaagtactcaatctcgaattccttcacaattt-attgggatatgtcccgaa |
21706086 |
T |
|
| Q |
116 |
tactgtcatgcaaagtggccatctcactctttaaaggatcttcttgtgagcgattgtcctaaattggctttgtcatggatcgctgtgatgatacgctctg |
215 |
Q |
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||||||| ||||||||||||||||||||||||||||| |||| |||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||| |
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| T |
21706087 |
tactgtcttgcaaagtggccatctcactctttaaaggctcttgttgtgaacgattgtcccaaattggctttgtcatggatctttgtgatgatacgctctg |
21706186 |
T |
|
| Q |
216 |
atcatagtcaaattgaagtatgttctattttgcagaagcataatttatttaatttcccaaatatgctttataatttcatcaacctttttcattttcagaa |
315 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21706187 |
atcatagtcaaaatgaagtatgttctattttgcagaagcataatttatttaatttcccaaatatgctttataatttcatcaacctttttcattttcagaa |
21706286 |
T |
|
| Q |
316 |
cttgcccctaaaactggacttggaattatatgatttgcctcagttgaactccatatcatggttgggtcctacaactccaagaaagactcagagtctccaa |
415 |
Q |
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| T |
21706287 |
cttgcccctaaaactggacttggaattatatgatttgcctcagttgaactccatatcatggttgggtcctacaactccaagacagactcagagtctccaa |
21706386 |
T |
|
| Q |
416 |
tgtctcaagcatttaaaagttatccgttgtgaaaatctgaaatctctattctccatggaggaatctagaagtctaccagagttgatgtccat |
507 |
Q |
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| T |
21706387 |
tgtctcaagcatttacaagttttacgttgtgaaaatctgaaatctctattctccatggaggaatctagaagtctaccagagttgatgtccat |
21706478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 302 - 507
Target Start/End: Complemental strand, 21713191 - 21712986
Alignment:
| Q |
302 |
tttcattttcagaacttgcccctaaaactggacttggaattatatgatttgcctcagttgaactccatatcatggttgggtcctacaactccaagaaaga |
401 |
Q |
| |
|
|||||| |||||||||||||| |||||||||| ||| | ||| ||| ||||||||||||||| |||||||||||| || ||||||| |||||||| ||| |
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| T |
21713191 |
tttcatgttcagaacttgcccttaaaactggagttgtatttacatgttttgcctcagttgaaatccatatcatggcaggatcctacagctccaagacaga |
21713092 |
T |
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| Q |
402 |
ctcagagtctccaatgtctcaagcatttaaaagttatccgttgtgaaaatctgaaatctctattctccatggaggaatctagaagtctaccagagttgat |
501 |
Q |
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| T |
21713091 |
tatggagtctccaatgtctccagtatttaaaagtaggtgattgtgaaaatttgaaatctttgttctccatgaaggaatctagaagtctaccagagttgat |
21712992 |
T |
|
| Q |
502 |
gtccat |
507 |
Q |
| |
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|||||| |
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| T |
21712991 |
gtccat |
21712986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 16 - 225
Target Start/End: Complemental strand, 21713543 - 21713334
Alignment:
| Q |
16 |
acatcattcttctcacaaataccacaaccacatcatgcttcctcaactgaaagtactcaaactccatttccttcacaattttattgggatatgtcccgaa |
115 |
Q |
| |
|
||||||||| |||||| |||||| ||||||| ||||||| |||||||| |||| ||||||||| || ||| ||||| | |||||||| ||||| ||| |
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| T |
21713543 |
acatcattcatctcaccaatacctgaaccacaccatgctttctcaactggaagttctcaaactcagttctcttgacaatctcattgggatgtgtcctgaa |
21713444 |
T |
|
| Q |
116 |
tactgtcatgcaaagtggccatctcactctttaaaggatcttcttgtgagcgattgtcctaaattggctttgtcatggatcgctgtgatgatacgctctg |
215 |
Q |
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||||||||||| |||||||||||||||||||| | ||||||| ||||| |||||||| ||||||| | |||| ||||||||| | ||||| || |||| |
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| T |
21713443 |
tactgtcatgcgaagtggccatctcactctttgagggatcttgttgtggaggattgtcccaaattggatatgtcgtggatcgctcttatgattcgttctg |
21713344 |
T |
|
| Q |
216 |
atcatagtca |
225 |
Q |
| |
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||||||||| |
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| T |
21713343 |
gtcatagtca |
21713334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 353 - 505
Target Start/End: Original strand, 21709236 - 21709388
Alignment:
| Q |
353 |
cctcagttgaactccatatcatggttgggtcctacaactccaagaaagactcagagtctccaatgtctcaagcatttaaaagttatccgttgtgaaaatc |
452 |
Q |
| |
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||||| |||||| |||||||||||||||||| || |||||||||| | | || |||||||||||||||| ||| || ||| ||| ||||||||||| |
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| T |
21709236 |
cctcaattgaacgccatatcatggttgggtcttataactccaagacaaattcggagtctccaatgtctccagcgttgaaatgttggtgattgtgaaaatc |
21709335 |
T |
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| Q |
453 |
tgaaatctctattctccatggaggaatctagaagtctaccagagttgatgtcc |
505 |
Q |
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||||||||||||||||| || |||||||||||||||||| | ||||||||||| |
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| T |
21709336 |
tgaaatctctattctccgtgaaggaatctagaagtctactaaagttgatgtcc |
21709388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 170 - 226
Target Start/End: Original strand, 21709088 - 21709144
Alignment:
| Q |
170 |
tgtcctaaattggctttgtcatggatcgctgtgatgatacgctctgatcatagtcaa |
226 |
Q |
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||||| || |||||| ||| ||||||||||||||||||||||||||||||||||||| |
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| T |
21709088 |
tgtccaaagttggctatgttatggatcgctgtgatgatacgctctgatcatagtcaa |
21709144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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