View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8586_low_7 (Length: 426)
Name: NF8586_low_7
Description: NF8586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8586_low_7 |
 | |
|
| [»] scaffold0001 (1 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] scaffold0196 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0001 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 14 - 426
Target Start/End: Original strand, 198653 - 199065
Alignment:
| Q |
14 |
ggacatcatgtcccaaagcggcgaggccatccgtgcaaagattgccttctcggaatatatgggagctaacaataaagagaccattgtgagtataattatg |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || || ||||||||||||||| || ||||||| || |||||||||||||||||||||| ||||||| |
|
|
| T |
198653 |
ggacatcatgtcccaaagcggcgaggccatccgcgctaatattgccttctcggaagatgtgggagcaaataataaagagaccattgtgagtacaattatg |
198752 |
T |
|
| Q |
114 |
ccaacggttgcgaagaccaaccggaataagagatggtttatggaaagcttgtaccgcactagaagaatcgctttcaagccataaacgagtccagctgttt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
198753 |
ccaacggttgcgaagaccaaccggaataagagatggttgatggaaagcttgtaccgcactagaagaatcactttcaagccataaacgagtccagctgttt |
198852 |
T |
|
| Q |
214 |
gaacttgcatattccatagccaaaatgaggcccaagatttctgcttggaagacagaaactatgccaagattgcttgcgaatccaccaagaaaagttccgc |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||| || |
|
|
| T |
198853 |
gaacttgcatattccatagccaaaatgaggcccatgatttctgcttggaagacaaaaactatgccaagattgcttgtgaaaccaccaagaaaagttcagc |
198952 |
T |
|
| Q |
314 |
gagagtcgcggaagacaccaccacaagcagccattaaatttcgaaccgacccatctgtgttggccttgacccaagggctggtcgggggatgccacacaac |
413 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
198953 |
gagagtcacggaagacaccaccacaagcagccattaaatttcgaaccgacccatctgtgttggccttgacccaagggctggtagggggctgccacacaac |
199052 |
T |
|
| Q |
414 |
cggaatgatgtcc |
426 |
Q |
| |
|
||||||||||||| |
|
|
| T |
199053 |
cggaatgatgtcc |
199065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 339; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 14 - 420
Target Start/End: Original strand, 21407499 - 21407905
Alignment:
| Q |
14 |
ggacatcatgtcccaaagcggcgaggccatccgtgcaaagattgccttctcggaatatatgggagctaacaataaagagaccattgtgagtataattatg |
113 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||| ||| ||||||| ||| || ||||||| || |||||||||||||||||||||| ||||||| |
|
|
| T |
21407499 |
ggacatcatgtcccaaagtggcgaggccatccgcgcaaacattcccttctctgaagatgtgggagcaaataataaagagaccattgtgagtacaattatg |
21407598 |
T |
|
| Q |
114 |
ccaacggttgcgaagaccaaccggaataagagatggtttatggaaagcttgtaccgcactagaagaatcgctttcaagccataaacgagtccagctgttt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
21407599 |
ccaacggttgcgaagaccaaccggaataagagattgtttatggaaagcttgtaccgcactagaagaatcactttcaagccataaacgagtccagctgttt |
21407698 |
T |
|
| Q |
214 |
gaacttgcatattccatagccaaaatgaggcccaagatttctgcttggaagacagaaactatgccaagattgcttgcgaatccaccaagaaaagttccgc |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
21407699 |
gaacttgcatattccatagccaaaatgaggcccaagatttctgcttggaggacagaaactatgccaagattgcttgcgaatccacccagaaaagttccgc |
21407798 |
T |
|
| Q |
314 |
gagagtcgcggaagacaccaccacaagcagccattaaatttcgaaccgacccatctgtgttggccttgacccaagggctggtcgggggatgccacacaac |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
21407799 |
gagagtcgcggaagacaccaccacaagcagccattaaattttgaaccgacccatctgtgttggccttgacccaagggctggtagggggctgccacacaac |
21407898 |
T |
|
| Q |
414 |
cggaatg |
420 |
Q |
| |
|
||||||| |
|
|
| T |
21407899 |
cggaatg |
21407905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 14 - 420
Target Start/End: Original strand, 21801991 - 21802397
Alignment:
| Q |
14 |
ggacatcatgtcccaaagcggcgaggccatccgtgcaaagattgccttctcggaatatatgggagctaacaataaagagaccattgtgagtataattatg |
113 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||| ||| ||||||| ||| || ||||||| || |||||||||||||||||||||| ||||||| |
|
|
| T |
21801991 |
ggacatcatgtcccaaagtggcgaggccatccgcgcaaacattcccttctctgaagatgtgggagcaaataataaagagaccattgtgagtacaattatg |
21802090 |
T |
|
| Q |
114 |
ccaacggttgcgaagaccaaccggaataagagatggtttatggaaagcttgtaccgcactagaagaatcgctttcaagccataaacgagtccagctgttt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
21802091 |
ccaacggttgcgaagaccaaccggaataagagattgtttatggaaagcttgtaccgcactagaagaatcactttcaagccataaacgagtccagctgttt |
21802190 |
T |
|
| Q |
214 |
gaacttgcatattccatagccaaaatgaggcccaagatttctgcttggaagacagaaactatgccaagattgcttgcgaatccaccaagaaaagttccgc |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
21802191 |
gaacttgcatattccatagccaaaatgaggcccaagatttctgcttggaggacagaaactatgccaagattgcttgcgaatccacccagaaaagttccgc |
21802290 |
T |
|
| Q |
314 |
gagagtcgcggaagacaccaccacaagcagccattaaatttcgaaccgacccatctgtgttggccttgacccaagggctggtcgggggatgccacacaac |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
21802291 |
gagagtcgcggaagacaccaccacaagcagccattaaattttgaaccgacccatctgtgttggccttgacccaagggctggtagggggctgccacacaac |
21802390 |
T |
|
| Q |
414 |
cggaatg |
420 |
Q |
| |
|
||||||| |
|
|
| T |
21802391 |
cggaatg |
21802397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 14 - 426
Target Start/End: Complemental strand, 27962994 - 27962582
Alignment:
| Q |
14 |
ggacatcatgtcccaaagcggcgaggccatccgtgcaaagattgccttctcggaatatatgggagctaacaataaagagaccattgtgagtataattatg |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| | ||| ||| || |||||||||||||||||||||| ||||||| |
|
|
| T |
27962994 |
ggacatcatgtcccaaagcggcgaggccatccgcgcaaacattgccttctcggaagacgtggaagcaaataataaagagaccattgtgagtacaattatg |
27962895 |
T |
|
| Q |
114 |
ccaacggttgcgaagaccaaccggaataagagatggtttatggaaagcttgtaccgcactagaagaatcgctttcaagccataaacgagtccagctgttt |
213 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
27962894 |
ccaacggttgcgaagaccaaccagaataagagatggtttatggaaagcttgtaccgcactagaagaatcgctttcaagccacaaacgagtccagctgttt |
27962795 |
T |
|
| Q |
214 |
gaacttgcatattccatagccaaaatgaggcccaagatttctgcttggaagacagaaactatgccaagattgcttgcgaatccaccaagaaaagttccgc |
313 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27962794 |
gaacttgcatattccgtagacaaaatgaggcccacgatttctgcttggaagacagaaactatgccaagattgcttgcgaatccaccaagaaaagttccgc |
27962695 |
T |
|
| Q |
314 |
gagagtcgcggaagacaccaccacaagcagccattaaatttcgaaccgacccatctgtgttggccttgacccaagggctggtcgggggatgccacacaac |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||| |
|
|
| T |
27962694 |
tagagtcgcggaagacaccaccacaagcagccattaaattttgaaccgacccatctgtgttggccttgacccaagggatggtagggggctgccacacaat |
27962595 |
T |
|
| Q |
414 |
cggaatgatgtcc |
426 |
Q |
| |
|
||||||||||||| |
|
|
| T |
27962594 |
cggaatgatgtcc |
27962582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 15 - 426
Target Start/End: Complemental strand, 27916574 - 27916163
Alignment:
| Q |
15 |
gacatcatgtcccaaagcggcgaggccatccgtgcaaagattgccttctcggaatatatgggagctaacaataaagagaccattgtgagtataattatgc |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||| | ||| ||| || |||||||||||||||||||||| |||||||| |
|
|
| T |
27916574 |
gacatcatgtcccaaagcggcgaggccatccgcgcaaacattgccttctcggaagacgtggaagcaaataataaagagaccattgtgagtacaattatgc |
27916475 |
T |
|
| Q |
115 |
caacggttgcgaagaccaaccggaataagagatggtttatggaaagcttgtaccgcactagaagaatcgctttcaagccataaacgagtccagctgtttg |
214 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
27916474 |
caacggttgcgaagaccaacctgaataagagatggtttatggaaagcttgtaccgcactagaagaatcgctttcaagccacaaacgagtccagctgtttg |
27916375 |
T |
|
| Q |
215 |
aacttgcatattccatagccaaaatgaggcccaagatttctgcttggaagacagaaactatgccaagattgcttgcgaatccaccaagaaaagttccgcg |
314 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27916374 |
aacttgcatattccgtagacaaaatgaggcccacgatttctgcttggaagacagaaactatgccaagattgcttgcgaatccaccaagaaaagttccgct |
27916275 |
T |
|
| Q |
315 |
agagtcgcggaagacaccaccacaagcagccattaaatttcgaaccgacccatctgtgttggccttgacccaagggctggtcgggggatgccacacaacc |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||| | |
|
|
| T |
27916274 |
agagtcgcggaagacaccaccacaagcagccattaaattttgaaccgacccatctgtgttggccttgacccaagggatggtagggggctgccacacaatc |
27916175 |
T |
|
| Q |
415 |
ggaatgatgtcc |
426 |
Q |
| |
|
|||||||||||| |
|
|
| T |
27916174 |
ggaatgatgtcc |
27916163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 14 - 426
Target Start/End: Original strand, 10988171 - 10988583
Alignment:
| Q |
14 |
ggacatcatgtcccaaagcggcgaggccatccgtgcaaagattgccttctcggaatatatgggagctaacaataaagagaccattgtgagtataattatg |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| || ||||||| || |||||||||||| ||||||||| ||||||| |
|
|
| T |
10988171 |
ggacatcatgtcccaaagcggcgaggccatccgcgcaaacattgccttctcggaagatgtgggagcaaataataaagagacccttgtgagtacaattatg |
10988270 |
T |
|
| Q |
114 |
ccaacggttgcgaagaccaaccggaataagagatggtttatggaaagcttgtaccgcactagaagaatcgctttcaagccataaacgagtccagctgttt |
213 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
10988271 |
ccaacggttgcgaagactaaccggaataagagatggtttatggaaagcttgaaccgcactagaagaatcactttcaagccataaacgagtccagctgttt |
10988370 |
T |
|
| Q |
214 |
gaacttgcatattccatagccaaaatgaggcccaagatttctgcttggaagacagaaactatgccaagattgcttgcgaatccaccaagaaaagttccgc |
313 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||| |
|
|
| T |
10988371 |
gaacttgcatattccatagccaaaatgagtcccatgatttctgcttggaagacagaaactatgccaagattacttgtgaaaccaccaagaaaagttccgc |
10988470 |
T |
|
| Q |
314 |
gagagtcgcggaagacaccaccacaagcagccattaaatttcgaaccgacccatctgtgttggccttgacccaagggctggtcgggggatgccacacaac |
413 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
10988471 |
gagagtcacggaagacaccaccacaagcagccattaaagttcgaaccgacccatctgtgttggccttgacccaagggctggtagggggctgccacacaac |
10988570 |
T |
|
| Q |
414 |
cggaatgatgtcc |
426 |
Q |
| |
|
||||||||||||| |
|
|
| T |
10988571 |
cggaatgatgtcc |
10988583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0196 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: scaffold0196
Description:
Target: scaffold0196; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 14 - 374
Target Start/End: Original strand, 31489 - 31849
Alignment:
| Q |
14 |
ggacatcatgtcccaaagcggcgaggccatccgtgcaaagattgccttctcggaatatatgggagctaacaataaagagaccattgtgagtataattatg |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| || ||||||| || |||||||||||| ||||||||| ||||||| |
|
|
| T |
31489 |
ggacatcatgtcccaaagcggcgaggccatccgcgcaaacattgccttctcggaagatgtgggagcaaataataaagagacccttgtgagtacaattatg |
31588 |
T |
|
| Q |
114 |
ccaacggttgcgaagaccaaccggaataagagatggtttatggaaagcttgtaccgcactagaagaatcgctttcaagccataaacgagtccagctgttt |
213 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
31589 |
ccaacggttgcgaagactaaccggaataagagatggtttatggaaagcttgaaccgcactagaagaatcactttcaagccataaacgagtccagctgttt |
31688 |
T |
|
| Q |
214 |
gaacttgcatattccatagccaaaatgaggcccaagatttctgcttggaagacagaaactatgccaagattgcttgcgaatccaccaagaaaagttccgc |
313 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||| |
|
|
| T |
31689 |
gaacttgcatattccatagccaaaatgagtcccatgatttctgcttggaagacagaaactatgccaagattacttgtgaaaccaccaagaaaagttccgc |
31788 |
T |
|
| Q |
314 |
gagagtcgcggaagacaccaccacaagcagccattaaatttcgaaccgacccatctgtgtt |
374 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
31789 |
gagagtcacggaagacaccaccacaagcagccattaaagttcgaaccgacccatctgtgtt |
31849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 84 - 388
Target Start/End: Complemental strand, 51882687 - 51882383
Alignment:
| Q |
84 |
aataaagagaccattgtgagtataattatgccaacggttgcgaagaccaaccggaataagagatggtttatggaaagcttgtaccgcactagaagaatcg |
183 |
Q |
| |
|
|||||| | ||||||||||||| |||| ||||||||||| ||||||||||| ||||||||||||||||||| || || || |||||||||| |||||| |
|
|
| T |
51882687 |
aataaacataccattgtgagtacaattgtgccaacggttccgaagaccaacatgaataagagatggtttatgaaatgcctgggccgcactagaggaatcg |
51882588 |
T |
|
| Q |
184 |
ctttcaagccataaacgagtccagctgtttgaacttgcatattccatagccaaaatgaggcccaagatttctgcttggaagacagaaactatgccaagat |
283 |
Q |
| |
|
||||||||||| || || | ||| |||||||| ||||| ||||||||||||||||| ||||| | ||| | | ||| ||||||||| | |||| || |
|
|
| T |
51882587 |
ctttcaagccacaagcgggaccaattgtttgaagccgcatactccatagccaaaatgagacccaaaacttcaacctcgaaaacagaaactctaccaacat |
51882488 |
T |
|
| Q |
284 |
tgcttgcgaatccaccaagaaaagttccgcgagagtcgcggaagacaccaccacaagcagccattaaatttcgaaccgacccatctgtgttggccttgac |
383 |
Q |
| |
|
|| ||||||| ||||||||||||||||||| | | || || || | |||||| ||||| | ||| ||||||| ||||||||| || ||||| | ||| || |
|
|
| T |
51882487 |
tggttgcgaacccaccaagaaaagttccgcaataatcacgaaaaataccaccgcaagcggacatcaaatttctaaccgacccgtccgtgttagtcttcac |
51882388 |
T |
|
| Q |
384 |
ccaag |
388 |
Q |
| |
|
||||| |
|
|
| T |
51882387 |
ccaag |
51882383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 118 - 355
Target Start/End: Complemental strand, 21355113 - 21354872
Alignment:
| Q |
118 |
cggttgcgaagaccaaccggaataagagatggtttatggaaagcttgtaccgcactagaagaatcgctttcaagccataaacgagtcc----agctgttt |
213 |
Q |
| |
|
||||| ||||||| ||| |||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||| ||| || |||||||| |
|
|
| T |
21355113 |
cggttccgaagacaaacaggaataagagatggtttatggaaagcctgaaccgcactagaagagtcgctttcaagccataaatgagaccagctagctgttt |
21355014 |
T |
|
| Q |
214 |
gaacttgcatattccatagccaaaatgaggcccaagatttctgcttggaagacagaaactatgccaagattgcttgcgaatccaccaagaaaagttccgc |
313 |
Q |
| |
|
|| |||||||| ||| ||| ||||| ||||| |||||||||| ||||| |||||| |||| || || || || ||||||||||||||||| |
|
|
| T |
21355013 |
gatgccgcatattctataaccattatgagtcccaaaatttctgctttgaagatagaaaccgaaccaatgttactagcaaaaccaccaagaaaagttccat |
21354914 |
T |
|
| Q |
314 |
gagagtcgcggaagacaccaccacaagcagccattaaatttc |
355 |
Q |
| |
|
||||||| || || | |||||| |||||| ||||||||||| |
|
|
| T |
21354913 |
gagagtcacgaaaaagaccaccgcaagcaaacattaaatttc |
21354872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 16 - 311
Target Start/End: Original strand, 25110443 - 25110738
Alignment:
| Q |
16 |
acatcatgtcccaaagcggcgaggccatccgtgcaaagattgccttctcggaatatatgggagctaacaataaagagaccattgtgagtataattatgcc |
115 |
Q |
| |
|
||||||||||||||||| || |||||||| | |||| ||| ||||| ||||| ||||| |||| || | ||| | | ||| |||| ||||||||| |
|
|
| T |
25110443 |
acatcatgtcccaaagcagcaaggccatcagcacaaacatttccttcgcggaagatatgcgagcaaatgagaaacaaattattttgagagcaattatgcc |
25110542 |
T |
|
| Q |
116 |
aacggttgcgaagaccaaccggaataagagatggtttatggaaagcttgtaccgcactagaagaatcgctttcaagccataaacgagtccagctgtt--t |
213 |
Q |
| |
|
| | || ||||||| || ||||||||||||||||||||||| ||||| ||||||||| |||||| ||||||||||||||| ||| ||| |||| | |
|
|
| T |
25110543 |
acctcttccgaagacaaataggaataagagatggtttatggaaggcttgaaccgcactaatagaatcactttcaagccataaatgagaccacatgttgat |
25110642 |
T |
|
| Q |
214 |
gaacttgcatattccatagccaaaatgaggcccaagatttctgcttggaagacagaaactatgccaagattgcttgcgaatccaccaagaaaagttcc |
311 |
Q |
| |
|
|| | |||||||| || |||| | ||||||||| ||||| |||| |||| |||||| || |||| |||||| ||||| ||||| | ||||||||| |
|
|
| T |
25110643 |
gacc--gcatattctatggccagtaggaggcccaaaatttccgcttcaaagatagaaaccataccaatattgctagcgaaaccacctaaaaaagttcc |
25110738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 16 - 311
Target Start/End: Original strand, 25169535 - 25169830
Alignment:
| Q |
16 |
acatcatgtcccaaagcggcgaggccatccgtgcaaagattgccttctcggaatatatgggagctaacaataaagagaccattgtgagtataattatgcc |
115 |
Q |
| |
|
||||||||||||||||| || |||||||| | |||| ||| ||||| ||||| ||||| |||| || | ||| | | ||| |||| ||||||||| |
|
|
| T |
25169535 |
acatcatgtcccaaagcagcaaggccatcagcacaaacatttccttcgcggaagatatgcgagcaaatgagaaacaaattattttgagagcaattatgcc |
25169634 |
T |
|
| Q |
116 |
aacggttgcgaagaccaaccggaataagagatggtttatggaaagcttgtaccgcactagaagaatcgctttcaagccataaacgagtccagctgtt--t |
213 |
Q |
| |
|
| | || ||||||| || ||||||||||||||||||||||| ||||| ||||||||| |||||| ||||||||||||||| ||| ||| |||| | |
|
|
| T |
25169635 |
acctcttccgaagacaaataggaataagagatggtttatggaaggcttgaaccgcactaatagaatcactttcaagccataaatgagaccacatgttgat |
25169734 |
T |
|
| Q |
214 |
gaacttgcatattccatagccaaaatgaggcccaagatttctgcttggaagacagaaactatgccaagattgcttgcgaatccaccaagaaaagttcc |
311 |
Q |
| |
|
|| | |||||||| || |||| | ||||||||| ||||| |||| |||| |||||| || |||| |||||| ||||| ||||| | ||||||||| |
|
|
| T |
25169735 |
gacc--gcatattctatggccagtaggaggcccaaaatttccgcttcaaagatagaaaccataccaatattgctagcgaaaccacctaaaaaagttcc |
25169830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 250 - 387
Target Start/End: Original strand, 33852422 - 33852559
Alignment:
| Q |
250 |
atttctgcttggaagacagaaactatgccaagattgcttgcgaatccaccaagaaaagttccgcgagagtcgcggaagacaccaccacaagcagccatta |
349 |
Q |
| |
|
|||||||| | ||| ||||||||| |||||||||||||||||| ||||||| ||| || || ||||| || | || | |||||| ||||||||||| | |
|
|
| T |
33852422 |
atttctgcctcgaaaacagaaactgcgccaagattgcttgcgaacccaccaaaaaatgtgccacgagaatcacaaaaaataccaccgcaagcagccataa |
33852521 |
T |
|
| Q |
350 |
aatttcgaaccgacccatctgtgttggccttgacccaa |
387 |
Q |
| |
|
|||||| ||||||||| || ||||| | ||| |||||| |
|
|
| T |
33852522 |
aatttctaaccgacccgtccgtgtttgtcttcacccaa |
33852559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 136 - 190
Target Start/End: Original strand, 33852365 - 33852419
Alignment:
| Q |
136 |
ggaataagagatggtttatggaaagcttgtaccgcactagaagaatcgctttcaa |
190 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||| ||||||||| ||||||| |
|
|
| T |
33852365 |
ggaataagagatggtttatggaaagcttgaactgcacaagaagaatcactttcaa |
33852419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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