View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8586_low_8 (Length: 397)
Name: NF8586_low_8
Description: NF8586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8586_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 17 - 371
Target Start/End: Complemental strand, 29517282 - 29516927
Alignment:
| Q |
17 |
atttaaaatcttgattctaataaagttactaaccaa-atttgttgttttaatttttgttaatttgaaaattgcggggagctgcaacaacatgctatgttg |
115 |
Q |
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| T |
29517282 |
atttaaaatcttgattctaatcaagttacttaacaatatttgttgttttaatttttgttaatttgaaaattgcagggagctgcaacaacatgctatgttg |
29517183 |
T |
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| Q |
116 |
ctcttcatccaagcttgaaaggagtaactgggaagtactttttggattgtaatgagtttcaaccaagtgcttttgcgtcaaatggactcttaggaagaaa |
215 |
Q |
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| T |
29517182 |
ctcttcatccaagcttgaaaggagtaactgggaagtactttttggattgtaatgagtttcaaccaagtgcttttgcgtcaaatggactattaggaagaaa |
29517083 |
T |
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| Q |
216 |
actttgggattttagcaacaagttgatcaattcaatttcaaagtcttgatttgtcttgctcatccatcactctcgtcaaatcaattattagtagttatat |
315 |
Q |
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| T |
29517082 |
actttgggattttagcaacaagttgatcaattcaatttcaaagtcttgatttgtcttgctcatccatcactctcgtcaaatcaattattagtagttatat |
29516983 |
T |
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| Q |
316 |
atatgacttgtattatgtgcccctaaaatagaagcctttttcttttgtgtgtactt |
371 |
Q |
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| T |
29516982 |
atatgacttgtattatgtgcccctaaaatagaagccttcttcttttgtgtgtactt |
29516927 |
T |
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Back To:
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Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 85 - 266
Target Start/End: Original strand, 40103679 - 40103860
Alignment:
| Q |
85 |
ttgcggggagctgcaacaacatgctatgttgctcttcatccaagcttgaaaggagtaactgggaagtactttttggattgtaatgagtttcaaccaagtg |
184 |
Q |
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|||| ||||||||| || ||||| |||||||| || || ||||| | ||||| |||||||||||||||||| ||||||| ||||| || | ||||||| |
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| T |
40103679 |
ttgcagggagctgccacgacatgttatgttgcactccacccaagtgtaaaaggtgtaactgggaagtactttgtggattgcaatgaattcaagccaagtg |
40103778 |
T |
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| Q |
185 |
cttttgcgtcaaatggactcttaggaagaaaactttgggattttagcaacaagttgatcaattcaatttcaaagtcttgatt |
266 |
Q |
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| T |
40103779 |
catatgcaaaaaataaactcttagcaaagaaactttgggatttcagcaacaagttgatcaattcaatttcaaaagcttgatt |
40103860 |
T |
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