View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8587_high_14 (Length: 220)
Name: NF8587_high_14
Description: NF8587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8587_high_14 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 38 - 220
Target Start/End: Complemental strand, 37663278 - 37663096
Alignment:
| Q |
38 |
atttgaagcaagcataagaaagaacacacttctcaaaagtagcaactatagagcatatattttttagatcaaataacaccaaataaaattcataaactat |
137 |
Q |
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| T |
37663278 |
atttgaagcaagcataagaaagaacacacttctcaaaagtagcaactatagagcatatattttttagatcaaataacaccaaataaaattcataaactat |
37663179 |
T |
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| Q |
138 |
caaagtgaaaaactaggcgtacatattaaattggttttacttgttctaggattgcatctataagaatgcaagtaaaaatgata |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37663178 |
caaagtgaaaaactaggcgtacatattaaattggttttacttgttctaggattgcatctataagaatgcaagtaaaaatgata |
37663096 |
T |
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