View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8587_low_1 (Length: 710)
Name: NF8587_low_1
Description: NF8587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8587_low_1 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 635; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 635; E-Value: 0
Query Start/End: Original strand, 20 - 670
Target Start/End: Complemental strand, 22513486 - 22512836
Alignment:
| Q |
20 |
gaagattgggatatggatgtgaacaagtctttagttttaccatctaaaaataaagaatgccagaagcatactgccaatactttacaagtaagtgaagatc |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
22513486 |
gaagattgggatatggatgtgaacaagtctttagttttaccatctaaaaataaagaatgccagaagcatactgccaatactttacaagtaactgaagatc |
22513387 |
T |
|
| Q |
120 |
aaaagatagaaaatctatcgacacaacctccactcccgcctaagccacctgatatttgttgtcgtggagctgctgccaagagatatattgtttcagactg |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22513386 |
aaaagatagaaaatctatcgacacaacctccactcccgcctaagccacctgatatttgttgtcgtggagctgctgccaagagatatattgtttcagactg |
22513287 |
T |
|
| Q |
220 |
tgattcggtggaagtttattttgactcaattcattacattgattagtactatgctgaccggacaatcttagctggtcgaaaggagatggaattcatggct |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22513286 |
tgattcggtggaagtttattttgactcaattcattacattgattactactatggtgaccggacaatcttagctggtcgaaaggagatggaattcatggct |
22513187 |
T |
|
| Q |
320 |
aacttttgtgcatttcagttttggcagcacattttcaaggaattggacaagcaacttgaacagaaggaggctgaaatgaagctggttaataatgcttcag |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22513186 |
aacttttgtgcatttcagttttggcagcacattttcaaggaattggacaagcaacttgaacagaaggaggctgaaatgaagctggttaataatgcttcag |
22513087 |
T |
|
| Q |
420 |
ttctcaagcaacattatgaaaagaaacgtaatgagttggaacatgagaagttgttcatgctagactatcatgatttatgcttgccatatgtaagcaaagt |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
22513086 |
ttctcaagcaacattatgaaaagaaacgtaatgagttggaacatgagaagttgttcatgctagactatcatgatctatgcttgccatatgtaagcaaagt |
22512987 |
T |
|
| Q |
520 |
gagaaagagtgagggtgcaacactatatggatcaaggtcactatccttcctcactagtgacggcattttgaagccaccagatattgagctcactagacca |
619 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22512986 |
gagaaagagtgagggtgcaacactatatggatcaaggtcactatccttcctcactagtgacggcattttgaagccaccagatattgagctcactagacca |
22512887 |
T |
|
| Q |
620 |
cctattaatagcaaggcacaatggaagcaagtcttcacacctgattctgat |
670 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22512886 |
cctattaatagcaaggcacaatggaagcaagtcttcacacctgattctgat |
22512836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 122; Significance: 3e-62; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 465 - 670
Target Start/End: Original strand, 35723502 - 35723707
Alignment:
| Q |
465 |
agaagttgttcatgctagactatcatgatttatgcttgccatatgtaagcaaagtgagaaagagtgagggtgcaacactatatggatcaaggtcactatc |
564 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||| ||| |||||| ||||| | ||||||||||| |||||| |
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| T |
35723502 |
agaagttgttcatgctagactatcatgatttttacttaccatatgtaagcaaagtgagagagattgagggaacaacattgtatggatcaagaacactatt |
35723601 |
T |
|
| Q |
565 |
cttcctcactagtgacggcattttgaagccaccagatattgagctcactagaccacctattaatagcaaggcacaatggaagcaagtcttcacacctgat |
664 |
Q |
| |
|
||||||||||||||| |||||||||||||||| || ||||||||| ||||||||||||||| || ||||| |||| ||||||||||||||||||||| || |
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| T |
35723602 |
cttcctcactagtgaaggcattttgaagccactagctattgagcttactagaccacctattgatggcaagtcacagtggaagcaagtcttcacacctaat |
35723701 |
T |
|
| Q |
665 |
tctgat |
670 |
Q |
| |
|
|||||| |
|
|
| T |
35723702 |
tctgat |
35723707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 465 - 670
Target Start/End: Original strand, 35707539 - 35707744
Alignment:
| Q |
465 |
agaagttgttcatgctagactatcatgatttatgcttgccatatgtaagcaaagtgagaaagagtgagggtgcaacactatatggatcaaggtcactatc |
564 |
Q |
| |
|
||||||||||||||||||||||| ||||||| | | | ||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||| |
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|
| T |
35707539 |
agaagttgttcatgctagactattatgatttctacataccatatgtaagcaaagtgagaaagattgagggaacaacactatatggatcaagaacactatt |
35707638 |
T |
|
| Q |
565 |
cttcctcactagtgacggcattttgaagccaccagatattgagctcactagaccacctattaatagcaaggcacaatggaagcaagtcttcacacctgat |
664 |
Q |
| |
|
|||||| |||| ||| || || |||||||||| || ||||||||||||||||||||||||| || | |||||||||||||||||||| ||||||||| | |
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| T |
35707639 |
cttccttactactgaaggaatattgaagccactagctattgagctcactagaccacctattgatggaaaggcacaatggaagcaagttttcacacctagt |
35707738 |
T |
|
| Q |
665 |
tctgat |
670 |
Q |
| |
|
|||||| |
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|
| T |
35707739 |
tctgat |
35707744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 99; Significance: 2e-48; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 20 - 134
Target Start/End: Original strand, 42313751 - 42313865
Alignment:
| Q |
20 |
gaagattgggatatggatgtgaacaagtctttagttttaccatctaaaaataaagaatgccagaagcatactgccaatactttacaagtaagtgaagatc |
119 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
42313751 |
gaagactgggatatggatgtggacaagtctttagttttaccatctaaaaataaagaatgccagaagcatactgccaatactttacatataagtgaagatc |
42313850 |
T |
|
| Q |
120 |
aaaagatagaaaatc |
134 |
Q |
| |
|
||||||||||||||| |
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|
| T |
42313851 |
aaaagatagaaaatc |
42313865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 133
Target Start/End: Original strand, 42309836 - 42309897
Alignment:
| Q |
72 |
aagaatgccagaagcatactgccaatactttacaagtaagtgaagatcaaaagatagaaaat |
133 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
42309836 |
aagaataccagaagcatgttgccaatactttacaagttaatgaagatcaaaagatagaaaat |
42309897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 90; Significance: 4e-43; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 254 - 359
Target Start/End: Complemental strand, 39609848 - 39609743
Alignment:
| Q |
254 |
tacattgattagtactatgctgaccggacaatcttagctggtcgaaaggagatggaattcatggctaacttttgtgcatttcagttttggcagcacattt |
353 |
Q |
| |
|
|||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39609848 |
tacattgattgctattatggtgaccggacaatcttagctggtcgaaaggagatggaattcatggctaacttttgtgcatttcagttttggcagcacattt |
39609749 |
T |
|
| Q |
354 |
tcaagg |
359 |
Q |
| |
|
|||||| |
|
|
| T |
39609748 |
tcaagg |
39609743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 200 - 257
Target Start/End: Complemental strand, 48122796 - 48122739
Alignment:
| Q |
200 |
agatatattgtttcagactgtgattcggtggaagtttattttgactcaattcattaca |
257 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
48122796 |
agatatattgtttcagactgtgattcagtggaagtttattacaactcaattcattaca |
48122739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 387 - 469
Target Start/End: Original strand, 27959202 - 27959284
Alignment:
| Q |
387 |
aggctgaaatgaagctggttaataatgcttcagttctcaagcaacattatgaaaagaaacgtaatgagttggaacatgagaag |
469 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
27959202 |
aggctgaaatgaagctggttaataatgcttcagttctcaagcaacattatgaaaagaaacttaatgagttggaacatgagaag |
27959284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 384 - 426
Target Start/End: Original strand, 14239275 - 14239317
Alignment:
| Q |
384 |
aggaggctgaaatgaagctggttaataatgcttcagttctcaa |
426 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14239275 |
aggaggctgaaatgaagctggttaataatgcttcagttctcaa |
14239317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 197
Target Start/End: Complemental strand, 13884072 - 13884016
Alignment:
| Q |
141 |
cacaacctccactcccgcctaagccacctgatatttgttgtcgtggagctgctgcca |
197 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||| | ||||||||||||| |||||||| |
|
|
| T |
13884072 |
cacaacctccaccccctcctaagccacctgatttatgttgtcgtggagttgctgcca |
13884016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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