View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8587_low_11 (Length: 341)

Name: NF8587_low_11
Description: NF8587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8587_low_11
NF8587_low_11
[»] chr1 (8 HSPs)
chr1 (8-324)||(46101837-46102164)
chr1 (44-170)||(46599040-46599166)
chr1 (44-170)||(1048978-1049104)
chr1 (68-170)||(14592085-14592187)
chr1 (93-170)||(29675360-29675437)
chr1 (93-173)||(8248953-8249033)
chr1 (93-171)||(1047835-1047913)
chr1 (89-167)||(25018225-25018303)
[»] chr2 (6 HSPs)
chr2 (1-172)||(925661-925832)
chr2 (44-170)||(6191788-6191914)
chr2 (22-165)||(31642467-31642610)
chr2 (44-170)||(3601770-3601896)
chr2 (44-166)||(13481424-13481546)
chr2 (44-168)||(29078370-29078494)
[»] chr6 (4 HSPs)
chr6 (9-172)||(33858833-33858996)
chr6 (68-168)||(34516340-34516440)
chr6 (45-170)||(24167233-24167358)
chr6 (101-168)||(13201484-13201551)
[»] chr3 (9 HSPs)
chr3 (1-171)||(45774545-45774715)
chr3 (18-172)||(7269547-7269701)
chr3 (40-170)||(7330882-7331012)
chr3 (68-167)||(31543492-31543591)
chr3 (44-165)||(28850029-28850150)
chr3 (104-154)||(30675644-30675694)
chr3 (68-170)||(34721015-34721117)
chr3 (44-165)||(10723678-10723799)
chr3 (61-153)||(12406068-12406159)
[»] chr8 (8 HSPs)
chr8 (2-172)||(8051505-8051675)
chr8 (44-170)||(16220742-16220869)
chr8 (44-170)||(26724685-26724811)
chr8 (44-170)||(30203239-30203365)
chr8 (34-167)||(41313019-41313152)
chr8 (44-140)||(37810161-37810257)
chr8 (35-167)||(3460728-3460860)
chr8 (104-154)||(39566096-39566146)
[»] chr5 (7 HSPs)
chr5 (2-172)||(26108546-26108716)
chr5 (44-165)||(19555205-19555326)
chr5 (24-169)||(4921442-4921587)
chr5 (24-169)||(41697303-41697448)
chr5 (42-149)||(43229190-43229297)
chr5 (99-170)||(20654662-20654733)
chr5 (68-167)||(39144425-39144524)
[»] chr4 (11 HSPs)
chr4 (44-168)||(36119526-36119650)
chr4 (34-167)||(31518358-31518491)
chr4 (68-172)||(48706872-48706976)
chr4 (63-170)||(5385728-5385834)
chr4 (44-170)||(7138740-7138866)
chr4 (90-172)||(54801658-54801740)
chr4 (44-172)||(53849377-53849505)
chr4 (44-168)||(10310386-10310510)
chr4 (20-116)||(23544143-23544239)
chr4 (93-166)||(48035403-48035476)
chr4 (68-116)||(51333027-51333074)
[»] chr7 (10 HSPs)
chr7 (44-168)||(39878602-39878726)
chr7 (22-170)||(22491686-22491834)
chr7 (47-170)||(33055485-33055608)
chr7 (61-167)||(25750192-25750298)
chr7 (45-170)||(29272737-29272862)
chr7 (68-165)||(41084981-41085078)
chr7 (44-172)||(45225694-45225822)
chr7 (22-168)||(3765668-3765814)
chr7 (93-170)||(45223612-45223689)
chr7 (105-173)||(45024740-45024808)
[»] scaffold0294 (1 HSPs)
scaffold0294 (44-164)||(2106-2226)


Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 8 - 324
Target Start/End: Original strand, 46101837 - 46102164
Alignment:
Q  8 cttttaacctatcaattatttttattcagggttatatatgtcaattactaaaaatatatgtttctttcctttcactttcttctctactttttcttatacc 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  46101837 cttttaacctatcaattatttttattcagggttatatatgtcaattactaaaaatatatgtttctttcctttcattttcttctctactttctcttatacc 46101936  T
Q  108 aaacaaccagatcaatcctcttactttccactcattttctttccttatataatctttcctttcac----------caaccaaacatacc-taaatgtttg 196  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||  |  |||||||||  |||          |||||||||| ||| ||||||||||    
T  46101937 aaacaaccaaatcaatcatcttactttccactcattttctttcctttcactatctttcctcacactttctttttgcaaccaaacaaaccctaaatgtttg 46102036  T
Q  197 tgggtaagtgtgcgcgcgcgtgtgccactgttcgtatctctgcttatataagattccaaagtttgttccaagatttcccaaacaaacggccttggcgttt 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46102037 tgggtaagtgtgcgcgcgcgtgtgccactgttcgtatctctgcttatataagattccaaagtttgttccaagatttcccaaacaaacggccttggcgttt 46102136  T
Q  297 ctttcatctcatctatcaacttattttc 324  Q
    ||||||||||||||||||||||||||||    
T  46102137 ctttcatctcatctatcaacttattttc 46102164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 44 - 170
Target Start/End: Complemental strand, 46599166 - 46599040
Alignment:
Q  44 tatgtcaattactaaaaatatatgtttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttactttccactcatt 143  Q
    ||||||||||| | || ||| ||  ||||||||| | |||||||  |||||||| |||| |||||||||| || | |||||||||||||||| ||||  |    
T  46599166 tatgtcaattattgaacatagatcattctttcctcttactttctattctactttctcttgtaccaaacaatcataacaatcctcttactttctactctct 46599067  T
Q  144 ttctttccttatataatctttcctttc 170  Q
    ||||||  | |||||||| ||||||||    
T  46599066 ttcttttttgatataatcattcctttc 46599040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 170
Target Start/End: Original strand, 1048978 - 1049104
Alignment:
Q  44 tatgtcaattactaaaaatatatgtttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttactttccactcatt 143  Q
    ||||||||||| |||| ||| || | |||||||| | |||||||  |||||||| |||| ||||||||||||| | ||||| | | |||||| ||||  |    
T  1048978 tatgtcaattaataaacatagatctatctttcctcttactttctattctactttctcttctaccaaacaaccataacaatcatttcactttctactctct 1049077  T
Q  144 ttctttccttatataatctttcctttc 170  Q
    ||| || |||| | |||||||||||||    
T  1049078 ttcatttcttacacaatctttcctttc 1049104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 170
Target Start/End: Original strand, 14592085 - 14592187
Alignment:
Q  68 tttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttactttccactcattttctttccttatataatctttcct 167  Q
    ||||||||||   |||||||  || ||||| |||| ||||||||||||| | |||||| ||||||||| ||||  |||||||||||| | |||||||| |    
T  14592085 tttctttcctccaactttctattccactttctcttgtaccaaacaaccaaaacaatccgcttactttctactctctttctttccttagacaatctttctt 14592184  T
Q  168 ttc 170  Q
    |||    
T  14592185 ttc 14592187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 93 - 170
Target Start/End: Complemental strand, 29675437 - 29675360
Alignment:
Q  93 actttttcttataccaaacaaccagatcaatcctcttactttccactcattttctttccttatataatctttcctttc 170  Q
    ||||| |||||||||||||||| | | ||||||  | |||||| |||| ||||||||||| ||| |||||||||||||    
T  29675437 actttctcttataccaaacaactaaaacaatcccatcactttctactctttttctttcctcatacaatctttcctttc 29675360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 173
Target Start/End: Complemental strand, 8249033 - 8248953
Alignment:
Q  93 actttttcttataccaaacaaccagatcaatcctcttactttccactcattttctttccttatataatctttcctttcacc 173  Q
    ||||||| ||| |||||||||||| | ||||||  | |||||||| ||  |||||||||| ||| ||||||||||||||||    
T  8249033 actttttattaaaccaaacaaccaaaacaatcccttcactttccattctctttctttcctcatacaatctttcctttcacc 8248953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 171
Target Start/End: Complemental strand, 1047913 - 1047835
Alignment:
Q  93 actttttcttataccaaacaaccagatcaatcctcttactttccactcattttctttccttatataatctttcctttca 171  Q
    ||||| |||| ||||||||||| | | |||||||||| || || |||  |||||||||| |||| ||||||||||||||    
T  1047913 actttctcttgtaccaaacaactaaaacaatcctcttcctatctactatttttctttccctatacaatctttcctttca 1047835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 167
Target Start/End: Original strand, 25018225 - 25018303
Alignment:
Q  89 ctctactttttcttataccaaacaaccagatcaatcctcttactttccactcattttctttccttatataatctttcct 167  Q
    ||||||||| |||||||||||||||||| |  ||||| ||  | ||| |||| ||||||||||| ||| ||||||||||    
T  25018225 ctctactttctcttataccaaacaaccaaaataatcccctcgcattctactctttttctttcctcatacaatctttcct 25018303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 144; Significance: 1e-75; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 925661 - 925832
Alignment:
Q  1 catcttccttttaacctatcaattatttttattcagggttatatatgtcaattactaaaaatatatgtttctttcctttcactttcttctctactttttc 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||    
T  925661 catctttcttttaacctatcaattatttttattcagggttatatatgtcaattactaaaaatacatgtttctttcctttcactttcttctctactttctc 925760  T
Q  101 ttataccaaacaaccagatcaatcctcttactttccactcattttctttccttatataatctttcctttcac 172  Q
    |||||||||||||||| ||||||||||||||||||||||| |||| |||||||||| |||||||||||||||    
T  925761 ttataccaaacaaccaaatcaatcctcttactttccactctttttttttccttatacaatctttcctttcac 925832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 44 - 170
Target Start/End: Complemental strand, 6191914 - 6191788
Alignment:
Q  44 tatgtcaattactaaaaatatatgtttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttactttccactcatt 143  Q
    |||||||||||||||||||| ||  |||||||||   ||||| |  || ||||| ||||| |||||||||||| | ||||||||| ||||||||||| |     
T  6191914 tatgtcaattactaaaaatagatcattctttcctcaaactttttaatccactttctcttaaaccaaacaaccaaaacaatcctctcactttccactcttc 6191815  T
Q  144 ttctttccttatataatctttcctttc 170  Q
    ||||||||| |||||||||||| ||||    
T  6191814 ttctttcctcatataatctttcttttc 6191788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 165
Target Start/End: Original strand, 31642467 - 31642610
Alignment:
Q  22 attatttttattcagggttatatatgtcaattactaaaaatatatgtttctttcctttcactttcttctctactttttcttataccaaacaaccagatca 121  Q
    |||||||||||||| || ||| ||||||||| | |||| ||| || |||||||||||  ||||||| || |||||| | |||||||||||||||| | ||    
T  31642467 attatttttattcaagggtatttatgtcaatcaataaatatagatctttctttccttcaactttctactttactttcttttataccaaacaaccaaaaca 31642566  T
Q  122 atcctcttactttccactcattttctttccttatataatctttc 165  Q
    ||||| | |||||||||||  ||| ||| || ||| ||||||||    
T  31642567 atcctttcactttccactctctttattttctcatacaatctttc 31642610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 44 - 170
Target Start/End: Complemental strand, 3601896 - 3601770
Alignment:
Q  44 tatgtcaattactaaaaatatatgtttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttactttccactcatt 143  Q
    |||||||||||| |||  ||| | |||||||||||  | ||||| ||| ||||| | || || |||||||||| | ||||||||| |||||| |||| ||    
T  3601896 tatgtcaattaccaaatgtatgtttttctttccttcaattttctactccactttcttttgtatcaaacaaccaaaacaatcctctcactttctactcttt 3601797  T
Q  144 ttctttccttatataatctttcctttc 170  Q
    ||||||||||| | |||||||||||||    
T  3601796 ttctttccttaaacaatctttcctttc 3601770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 44 - 166
Target Start/End: Complemental strand, 13481546 - 13481424
Alignment:
Q  44 tatgtcaattactaaaaatatatgtttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttactttccactcatt 143  Q
    |||||||||||  ||| ||| || ||||||||||   |||||||  || |||||  ||| ||||||||||||| | ||||||||| |||||| |||| ||    
T  13481546 tatgtcaattagaaaatatagatctttctttcctccaactttctattccactttcccttgtaccaaacaaccaaaacaatcctctcactttctactcttt 13481447  T
Q  144 ttctttccttatataatctttcc 166  Q
    ||||||||||| | |||||||||    
T  13481446 ttctttccttagacaatctttcc 13481424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 168
Target Start/End: Complemental strand, 29078494 - 29078370
Alignment:
Q  44 tatgtcaattactaaaaatatatgtttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttactttccactcatt 143  Q
    |||||||||||  ||| ||  || |||||||||||  |||||||  || ||||| | |||||||||||||||| | |||||| || |||||| | || ||    
T  29078494 tatgtcaattaaaaaatatggatctttctttccttcaactttctattccactttcttttataccaaacaaccaaaacaatcccctcactttctattcctt 29078395  T
Q  144 ttctttccttatataatctttcctt 168  Q
    |||||| || || ||||||||||||    
T  29078394 ttcttttctcatttaatctttcctt 29078370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 140; Significance: 3e-73; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 9 - 172
Target Start/End: Original strand, 33858833 - 33858996
Alignment:
Q  9 ttttaacctatcaattatttttattcagggttatatatgtcaattactaaaaatatatgtttctttcctttcactttcttctctactttttcttatacca 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||    
T  33858833 ttttaacctatcaattatttttattcagggttatatatgtcaattactaaaaatatatgtttctttcttttcactttcttctttactttctcttatacca 33858932  T
Q  109 aacaaccagatcaatcctcttactttccactcattttctttccttatataatctttcctttcac 172  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  33858933 aacaaccaaatcaatcctcttactttccactcattttctttccttatacaatctttcgtttcac 33858996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 68 - 168
Target Start/End: Original strand, 34516340 - 34516440
Alignment:
Q  68 tttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttactttccactcattttctttccttatataatctttcct 167  Q
    |||||||||||| ||||||   || ||||| | |||||||||||||||| | ||||||||| |||||| | || ||||||||||| ||||||||||||||    
T  34516340 tttctttcctttaactttccattccactttcttttataccaaacaaccaaaacaatcctctcactttctattctttttctttcctcatataatctttcct 34516439  T
Q  168 t 168  Q
    |    
T  34516440 t 34516440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 170
Target Start/End: Original strand, 24167233 - 24167358
Alignment:
Q  45 atgtcaattactaaaaatatatgtttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttactttccactcattt 144  Q
    |||||||||||||||  ||| | ||||||||||   |||||||  || | ||| |||| ||||||||||||| |  |||| |||||||||| ||||  ||    
T  24167233 atgtcaattactaaatttatgtctttctttcctccaactttctattccagtttctcttgtaccaaacaaccaaaataatcatcttactttctactctctt 24167332  T
Q  145 tctttccttatataatctttcctttc 170  Q
    |||||||||| | |||||||||||||    
T  24167333 tctttccttagacaatctttcctttc 24167358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 101 - 168
Target Start/End: Original strand, 13201484 - 13201551
Alignment:
Q  101 ttataccaaacaaccagatcaatcctcttactttccactcattttctttccttatataatctttcctt 168  Q
    ||||||||||||| || | ||||||||||||| || | || |||||||||||  ||||||||||||||    
T  13201484 ttataccaaacaatcaaaacaatcctcttactctctattctttttctttcctcttataatctttcctt 13201551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 135; Significance: 3e-70; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 45774715 - 45774545
Alignment:
Q  1 catcttccttttaacctatcaattatttttattcagggttatatatgtcaattactaaaaatatatgtttctttcctttcactttcttctctactttttc 100  Q
    |||||| |||| ||||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  45774715 catctttctttaaacctacaaattatttttatttagggttatatatgtcaattactaaaaatatatgtttctttcctttcactttcttctctactttctc 45774616  T
Q  101 ttataccaaacaaccagatcaatcctcttactttccactcattttctttccttatataatctttcctttca 171  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  45774615 ttataccaaacaaccaaatcaatcctcttactttccactcattttctttccgtatacaatctttcctttca 45774545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 18 - 172
Target Start/End: Original strand, 7269547 - 7269701
Alignment:
Q  18 atcaattatttttattcagggttatatatgtcaattactaaaaatatatgtttctttcctttcactttcttctctactttttcttataccaaacaaccag 117  Q
    |||| |||| |||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||| |||||||||||||     
T  7269547 atcagttatatttatatagggttatatatgtcaattactaaaaatatatgtttctttcctttcactttcttccccactttctcttgtaccaaacaaccaa 7269646  T
Q  118 atcaatcctcttactttccactcattttctttccttatataatctttcctttcac 172  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||    
T  7269647 atcaatcttcttactttccactcattttctttccttatacaatctttcctttcac 7269701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 40 - 170
Target Start/End: Original strand, 7330882 - 7331012
Alignment:
Q  40 tatatatgtcaattactaaaaatatatgtttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttactttccact 139  Q
    |||||||||||||||||||||||| ||  ||||||| |   |||||||  || ||||| ||||| ||||||||| || | ||||||||| ||||||||||    
T  7330882 tatatatgtcaattactaaaaatagatcattctttcttcaaactttctaatccactttctcttaaaccaaacaatcaaaacaatcctctcactttccact 7330981  T
Q  140 cattttctttccttatataatctttcctttc 170  Q
    |   ||||||||| ||| |||||||| ||||    
T  7330982 ctccttctttcctcatacaatctttcttttc 7331012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 167
Target Start/End: Original strand, 31543492 - 31543591
Alignment:
Q  68 tttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttactttccactcattttctttccttatataatctttcct 167  Q
    ||||||||||||||||||||   | ||||| |||||||||||||||||| | ||||||  ||| |||| ||| | |||||||||||| | ||||||||||    
T  31543492 tttctttcctttcactttctaacccactttctcttataccaaacaaccataacaatccctttattttctacttactttctttccttacacaatctttcct 31543591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 44 - 165
Target Start/End: Original strand, 28850029 - 28850150
Alignment:
Q  44 tatgtcaattactaaaaatatatgtttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttactttccactcatt 143  Q
    |||||||||||||||||||| ||  |||||||||   ||||||   || ||||| ||||| |||||||||||| | ||||| ||| |||||||||||       
T  28850029 tatgtcaattactaaaaatagatcattctttcctcaaactttcgaatccactttctcttaaaccaaacaaccaaaacaatcatctcactttccactctca 28850128  T
Q  144 ttctttccttatataatctttc 165  Q
    || |||||| ||| ||||||||    
T  28850129 ttttttcctcatacaatctttc 28850150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 154
Target Start/End: Complemental strand, 30675694 - 30675644
Alignment:
Q  104 taccaaacaaccagatcaatcctcttactttccactcattttctttcctta 154  Q
    ||||||||||||| | ||||||||| |||||| |||| |||||||||||||    
T  30675694 taccaaacaaccaaaacaatcctctcactttctactctttttctttcctta 30675644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 170
Target Start/End: Original strand, 34721015 - 34721117
Alignment:
Q  68 tttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttactttccactcattttctttccttatataatctttcct 167  Q
    |||||||||| | |||||||  | |||||| |||| || ||||||| || | ||||| |||||||||| |||   |||||||||||  ||||||||||||    
T  34721015 tttctttcctcttactttctattatactttctcttgtatcaaacaatcataacaatcatcttactttctactttctttctttccttgcataatctttcct 34721114  T
Q  168 ttc 170  Q
    |||    
T  34721115 ttc 34721117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 165
Target Start/End: Original strand, 10723678 - 10723799
Alignment:
Q  44 tatgtcaattactaaaaatatatgtttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttactttccactcatt 143  Q
    |||||||||||||| | ||| || |||||||||||  |||||||  || ||||| | |||||||||||||| | |  ||||| || ||||||  |||  |    
T  10723678 tatgtcaattactatatatagatctttctttccttcaactttctattccactttctattataccaaacaactaaaataatcccctcactttctcctctct 10723777  T
Q  144 ttctttccttatataatctttc 165  Q
    ||||||||| ||| ||||||||    
T  10723778 ttctttcctcatacaatctttc 10723799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 153
Target Start/End: Complemental strand, 12406159 - 12406068
Alignment:
Q  61 atatatgtttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttactttccactcattttctttcctt 153  Q
    |||||| |||||||||||||||||| || || |||||  ||||||||||||||| | |  |||| ||| |||||| ||||| |||| ||||||    
T  12406159 atatatctttctttcctttcacttttttatc-actttcacttataccaaacaactaaaataatcatctcactttctactcactttcattcctt 12406068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 107; Significance: 1e-53; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 2 - 172
Target Start/End: Original strand, 8051505 - 8051675
Alignment:
Q  2 atcttccttttaacctatcaattatttttattcagggttatatatgtcaattactaaaaatatatgtttctttcctttcactttcttctctactttttct 101  Q
    ||||| ||||| ||| ||||||||| |||||  ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||    
T  8051505 atctttcttttcaccaatcaattatatttatataggattatatatgtcaattactaaaaatatatgtttatttcctttcactttcttctccactttctct 8051604  T
Q  102 tataccaaacaaccagatcaatcctcttactttccactcattttctttccttatataatctttcctttcac 172  Q
    | ||||||||||||| ||||||| |||||||||  |||||||||||||||||||| |||||||||||||||    
T  8051605 tgtaccaaacaaccaaatcaatcttcttacttttgactcattttctttccttatacaatctttcctttcac 8051675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 44 - 170
Target Start/End: Original strand, 16220742 - 16220869
Alignment:
Q  44 tatgtcaattactaaaaa-tatatgtttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttactttccactcat 142  Q
    ||||||||||| |||||| || || |||||||||||| |||||||  || ||||| |||||||||||||| ||| | ||||||| | |||||| |||| |    
T  16220742 tatgtcaattattaaaaaatagatctttctttcctttaactttctattccactttctcttataccaaacatccaaaacaatcctttcactttctactctt 16220841  T
Q  143 tttctttccttatataatctttcctttc 170  Q
    |||||||||||||| |||||||||||||    
T  16220842 tttctttccttatacaatctttcctttc 16220869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 44 - 170
Target Start/End: Original strand, 26724685 - 26724811
Alignment:
Q  44 tatgtcaattactaaaaatatatgtttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttactttccactcatt 143  Q
    ||||||||||| |||| |||||| |||||||||||| |||||||  |||||||| |||| ||||||||||||| | ||||| ||| |||||| ||||  |    
T  26724685 tatgtcaattaataaagatatatctttctttccttttactttctattctactttctcttttaccaaacaaccataacaatcatctcactttctactctct 26724784  T
Q  144 ttctttccttatataatctttcctttc 170  Q
    ||| ||||||| | |||||||||||||    
T  26724785 ttcattccttacacaatctttcctttc 26724811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 44 - 170
Target Start/End: Original strand, 30203239 - 30203365
Alignment:
Q  44 tatgtcaattactaaaaatatatgtttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttactttccactcatt 143  Q
    ||||||||||| |||| |||||| |||||||||| | |||||||  |||||||| |||| ||||||||||||| | ||||| ||| |||||| ||||  |    
T  30203239 tatgtcaattaataaagatatatctttctttcctcttactttctattctactttctcttttaccaaacaaccataacaatcatctcactttctactctct 30203338  T
Q  144 ttctttccttatataatctttcctttc 170  Q
    ||| ||||||| | |||||||||||||    
T  30203339 ttcattccttacacaatctttcctttc 30203365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 34 - 167
Target Start/End: Original strand, 41313019 - 41313152
Alignment:
Q  34 cagggttatatatgtcaattactaaaaatatatgtttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttactt 133  Q
    ||||| ||| |||||||||||  ||| ||| || ||||||||||||||||||||  |  ||||| |||||||||||||||||| | ||||||  | | ||    
T  41313019 cagggatatttatgtcaattaaaaaatatagatctttctttcctttcactttctaattcactttctcttataccaaacaaccataacaatcccttcattt 41313118  T
Q  134 tccactcattttctttccttatataatctttcct 167  Q
    || ||| | |||||||||||| | ||||||||||    
T  41313119 tctacttactttctttccttacagaatctttcct 41313152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 44 - 140
Target Start/End: Complemental strand, 37810257 - 37810161
Alignment:
Q  44 tatgtcaattactaaaaatatatgtttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttactttccactc 140  Q
    |||||||||||||||||||| ||  |||||||||   |||||||  || ||||| ||||| |||||||||||| | ||||||||| |||||||||||    
T  37810257 tatgtcaattactaaaaataaatcattctttcctcaaactttctaatcgactttctcttaaaccaaacaaccaaaacaatcctctcactttccactc 37810161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 167
Target Start/End: Complemental strand, 3460860 - 3460728
Alignment:
Q  35 agggttatatatgtcaattactaaaaatatatgtttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttacttt 134  Q
    |||| ||| ||||||| || | ||| ||| || |||||||||| |||||||||  || ||||| |||||||||||||||||| | |||| |  | | |||    
T  3460860 aggggtatttatgtcagttgcaaaatataaatctttctttcctctcactttctaatccactttctcttataccaaacaaccataacaattccttcatttt 3460761  T
Q  135 ccactcattttctttccttatataatctttcct 167  Q
    | ||| | |||||||||||| | ||||||||||    
T  3460760 ctacttactttctttccttacacaatctttcct 3460728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 154
Target Start/End: Original strand, 39566096 - 39566146
Alignment:
Q  104 taccaaacaaccagatcaatcctcttactttccactcattttctttcctta 154  Q
    ||||||||||||| | ||||||||| |||||| |||| |||||||||||||    
T  39566096 taccaaacaaccaaaacaatcctctcactttctactctttttctttcctta 39566146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 103; Significance: 3e-51; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 2 - 172
Target Start/End: Complemental strand, 26108716 - 26108546
Alignment:
Q  2 atcttccttttaacctatcaattatttttattcagggttatatatgtcaattactaaaaatatatgtttctttcctttcactttcttctctactttttct 101  Q
    ||||| ||||| ||| ||||||||| |||||  ||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||| ||||| |||    
T  26108716 atctttcttttcaccaatcaattatatttatatagggttatatatgtcaattaggaaaaatacatgtttctttcctttcactttcttctccactttctct 26108617  T
Q  102 tataccaaacaaccagatcaatcctcttactttccactcattttctttccttatataatctttcctttcac 172  Q
    ||||||||||||||| || ||||||||||||||||| ||| ||||||| |||||| |||||||||||||||    
T  26108616 tataccaaacaaccaaattaatcctcttactttccattcactttcttttcttatacaatctttcctttcac 26108546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 44 - 165
Target Start/End: Original strand, 19555205 - 19555326
Alignment:
Q  44 tatgtcaattactaaaaatatatgtttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttactttccactcatt 143  Q
    ||||||||||||||||  ||| | |||||||||||  |||||||  || ||||| | |||||||||||||||| | ||||| |||||||||| |||| ||    
T  19555205 tatgtcaattactaaatttatgtctttctttccttcaactttctattccactttcttttataccaaacaaccaaaacaatcttcttactttctactcttt 19555304  T
Q  144 ttctttccttatataatctttc 165  Q
    ||||||||||| | ||||||||    
T  19555305 ttctttccttagacaatctttc 19555326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 24 - 169
Target Start/End: Original strand, 4921442 - 4921587
Alignment:
Q  24 tatttttattcagggttatatatgtcaattactaaaaatatatgtttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaat 123  Q
    |||||||||||| || ||| ||||||| ||| |||| ||  || |||||||||||| ||||| | || |||||| | | |||||||||||||| | ||||    
T  4921442 tatttttattcaaggatatttatgtcagttaataaatatgaatctttctttcctttaactttttactttactttctttaataccaaacaaccaaaacaat 4921541  T
Q  124 cctcttactttccactcattttctttccttatataatctttccttt 169  Q
    || || | |||||||||  ||||||| || ||| ||||||||||||    
T  4921542 cccctcattttccactctctttcttttctcatacaatctttccttt 4921587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 169
Target Start/End: Complemental strand, 41697448 - 41697303
Alignment:
Q  24 tatttttattcagggttatatatgtcaattactaaaaatatatgtttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaat 123  Q
    |||||||||||| || ||| ||||||| ||| |||| ||  || |||||||||||| ||||| | || |||||| | | |||||||||||||| | ||||    
T  41697448 tatttttattcaaggatatttatgtcagttaataaatatgaatctttctttcctttaactttttactttactttctttaataccaaacaaccaaaacaat 41697349  T
Q  124 cctcttactttccactcattttctttccttatataatctttccttt 169  Q
     | |||| ||| |||||  ||||||| || ||| ||||||||||||    
T  41697348 tcccttatttttcactctctttcttttctcatacaatctttccttt 41697303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 149
Target Start/End: Complemental strand, 43229297 - 43229190
Alignment:
Q  42 tatatgtcaattactaaaaatatatgtttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttactttccactca 141  Q
    ||||||||||||||||||  ||  | ||| |||||||  |||||||  || ||||| |||||||||||||||| | | |||||||||||||||| ||||     
T  43229297 tatatgtcaattactaaatttaggtctttgtttccttcaactttctattccactttctcttataccaaacaactaaaacaatcctcttactttctactct 43229198  T
Q  142 ttttcttt 149  Q
    | ||||||    
T  43229197 tcttcttt 43229190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 99 - 170
Target Start/End: Complemental strand, 20654733 - 20654662
Alignment:
Q  99 tcttataccaaacaaccagatcaatcctcttactttccactcattttctttccttatataatctttcctttc 170  Q
    ||||| |||||||||||| | ||||||||| ||||||||||| | ||| ||||| ||| |||||||| ||||    
T  20654733 tcttaaaccaaacaaccaaaacaatcctctcactttccactcctcttcgttcctcatacaatctttcttttc 20654662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 68 - 167
Target Start/End: Complemental strand, 39144524 - 39144425
Alignment:
Q  68 tttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttactttccactcattttctttccttatataatctttcct 167  Q
    |||||||||||| | |||||  || ||||| | || ||||||||||||| | ||||||  |||||||| | || |||||||| || ||||||||||||||    
T  39144524 tttctttcctttaattttctattccactttcttttgtaccaaacaaccaaaacaatccctttactttctattctttttcttttctcatataatctttcct 39144425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 44 - 168
Target Start/End: Original strand, 36119526 - 36119650
Alignment:
Q  44 tatgtcaattactaaaaatatatgtttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttactttccactcatt 143  Q
    ||||||||||| |||| |||||| |||||||||||  |||||||  || ||||| | |||||||||||||||| | ||||||||| | |||| | || ||    
T  36119526 tatgtcaattaataaatatatatctttctttccttcaactttctattccactttcttttataccaaacaaccaaaacaatcctctcattttctattcttt 36119625  T
Q  144 ttctttccttatataatctttcctt 168  Q
    ||||||||| |||||||||||||||    
T  36119626 ttctttcctcatataatctttcctt 36119650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 34 - 167
Target Start/End: Complemental strand, 31518491 - 31518358
Alignment:
Q  34 cagggttatatatgtcaattactaaaaatatatgtttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttactt 133  Q
    ||||| ||| |||||||||||  ||| ||| || ||||||||||||||||||||  || ||||| ||||||||||||||||||   ||||||  ||| ||    
T  31518491 caggggtatttatgtcaattaaaaaatatagatctttctttcctttcactttctaatccactttatcttataccaaacaaccatgacaatccctttattt 31518392  T
Q  134 tccactcattttctttccttatataatctttcct 167  Q
    || ||| | |||||||||||| | ||||||||||    
T  31518391 tctacttactttctttccttacacaatctttcct 31518358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 68 - 172
Target Start/End: Complemental strand, 48706976 - 48706872
Alignment:
Q  68 tttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttactttccactcattttctttccttatataatctttcct 167  Q
    ||||||||||   |||||||  || ||||| |||| ||||||||||||| | ||||||||| |||||| |||| || |||||||||| | ||||||||||    
T  48706976 tttctttcctccaactttctattccactttctcttgtaccaaacaaccaaaacaatcctctcactttctactctttctctttccttagacaatctttcct 48706877  T
Q  168 ttcac 172  Q
    |||||    
T  48706876 ttcac 48706872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 170
Target Start/End: Complemental strand, 5385834 - 5385728
Alignment:
Q  63 atatgtttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttactttccactcattttctttccttatataatct 162  Q
    |||| |||||||||| | |||||||| |||||||| |||| ||||||||||||| | ||||| ||| |||||| ||||  |||| ||||||| | |||||    
T  5385834 atatctttctttcctcttactttctt-tctactttctcttctaccaaacaaccataacaatcatctcactttctactctctttcattccttacacaatct 5385736  T
Q  163 ttcctttc 170  Q
    ||||||||    
T  5385735 ttcctttc 5385728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 44 - 170
Target Start/End: Complemental strand, 7138866 - 7138740
Alignment:
Q  44 tatgtcaattactaaaaatatatgtttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttactttccactcatt 143  Q
    |||||||||||||||||||||||  || ||||||   ||| |||  || ||||| ||||| ||||||||| || | ||||||||| |||||||||||       
T  7138866 tatgtcaattactaaaaatatatcattttttcctcaaactgtctaatccactttctcttaaaccaaacaatcaaaacaatcctctcactttccactctca 7138767  T
Q  144 ttctttccttatataatctttcctttc 170  Q
    ||||||||| ||| |||||||| ||||    
T  7138766 ttctttcctcatacaatctttcttttc 7138740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 90 - 172
Target Start/End: Complemental strand, 54801740 - 54801658
Alignment:
Q  90 tctactttttcttataccaaacaaccagatcaatcctcttactttccactcattttctttccttatataatctttcctttcac 172  Q
    |||||||| |||| |||||||||| || | |||||||||||||||| ||||  |||||||||||  | |||||||||||||||    
T  54801740 tctactttctcttgtaccaaacaatcataacaatcctcttactttctactctctttctttccttgcacaatctttcctttcac 54801658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 44 - 172
Target Start/End: Original strand, 53849377 - 53849505
Alignment:
Q  44 tatgtcaattactaaaaatatatgtttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttactttccactcatt 143  Q
    ||||||||||| |||| | |||| ||||||| || | ||||| |  |||||||| |||| ||||||||||||| | ||||  | | |||||| ||||  |    
T  53849377 tatgtcaattaataaatacatatctttcttttctcttactttttattctactttctcttttaccaaacaaccataacaattatttaactttctactctct 53849476  T
Q  144 ttctttccttatataatctttcctttcac 172  Q
    ||| ||||||| |||||||||||||||||    
T  53849477 ttcattccttacataatctttcctttcac 53849505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 168
Target Start/End: Original strand, 10310386 - 10310510
Alignment:
Q  44 tatgtcaattactaaaaatatatgtttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttactttccactcatt 143  Q
    |||||||||||  ||| ||  || |||||||||||  |||||||  || ||||| | |||||||||||||||| | |||||| || |||||| | |  ||    
T  10310386 tatgtcaattaaaaaatatggatctttctttccttcaactttctattccactttcttttataccaaacaaccaaaacaatcccctcactttctatttttt 10310485  T
Q  144 ttctttccttatataatctttcctt 168  Q
    ||||||||| || ||||||||||||    
T  10310486 ttctttcctcatttaatctttcctt 10310510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 23544239 - 23544143
Alignment:
Q  20 caattatttttattcagggttatatatgtcaattactaaaaatatatgtttctttcctttcactttcttctctactttttcttataccaaacaacca 116  Q
    |||||| || |||||| || ||| ||||| ||||| |||| |||||| |||||||||||  |||||||  || ||||| | ||||||||||||||||    
T  23544239 caattacttctattcaagggtatttatgttaattaataaatatatatctttctttccttcaactttctattccactttcttttataccaaacaacca 23544143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 166
Target Start/End: Complemental strand, 48035476 - 48035403
Alignment:
Q  93 actttttcttataccaaacaaccagatcaatcctcttactttccactcattttctttccttatataatctttcc 166  Q
    ||||| |||||||| ||||||||| |  ||||| || |||||| |||| ||||||||||| ||| |||||||||    
T  48035476 actttctcttatacgaaacaaccaaaataatcccctcactttctactccttttctttcctcatacaatctttcc 48035403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 116
Target Start/End: Original strand, 51333027 - 51333074
Alignment:
Q  68 tttctttcctttcactttcttctctactttttcttataccaaacaacca 116  Q
    |||||||||||||||||||||||| |||||   ||||||||||||||||    
T  51333027 tttctttcctttcactttcttctc-actttcatttataccaaacaacca 51333074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 44 - 168
Target Start/End: Complemental strand, 39878726 - 39878602
Alignment:
Q  44 tatgtcaattactaaaaatatatgtttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttactttccactcatt 143  Q
    ||||||||||| |||| |||||| |||||||||||  |||||||  || | ||| | |||||||||||||||| | ||||||||| | |||| | || ||    
T  39878726 tatgtcaattaataaatatatatctttctttccttcaactttctattccattttcttttataccaaacaaccaaaacaatcctctcattttctattcttt 39878627  T
Q  144 ttctttccttatataatctttcctt 168  Q
    ||||||||| |||||||||||||||    
T  39878626 ttctttcctcatataatctttcctt 39878602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 170
Target Start/End: Original strand, 22491686 - 22491834
Alignment:
Q  22 attatttttattcagggttatatatgtcaattactaaaaatatatgtttctttcctttcactttcttctctactttttcttataccaaacaaccagatca 121  Q
    |||||||||||| | || |||  ||||||||||||| |  || || |||||||||||  ||||||| ||| ||||| |||| ||||||||||||| | ||    
T  22491686 attatttttatttaagggtattaatgtcaattactacatttagatctttctttccttaaactttctactccactttctcttgtaccaaacaaccaaaaca 22491785  T
Q  122 atcctcttactttccactcattttctttccttatataatctttcctttc 170  Q
    ||||||||||||||  |||  ||| |||||||| | |||||||| ||||    
T  22491786 atcctcttactttctgctctctttttttccttagacaatctttcttttc 22491834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 47 - 170
Target Start/End: Original strand, 33055485 - 33055608
Alignment:
Q  47 gtcaattactaaaaatatatgtttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttactttccactcattttc 146  Q
    |||||||| |||| ||| || ||||||| |||| || |||| ||  ||||| |||||||||||||||| | | ||||| ||| |||||| |||| ||| |    
T  33055485 gtcaattattaaatatagatctttcttttctttaacattctacttcactttctcttataccaaacaactaaaacaatcatctcactttctactcttttac 33055584  T
Q  147 tttccttatataatctttcctttc 170  Q
    |||||| ||| |||||||||||||    
T  33055585 tttcctcatacaatctttcctttc 33055608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 61 - 167
Target Start/End: Original strand, 25750192 - 25750298
Alignment:
Q  61 atatatgtttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttactttccactcattttctttccttatataat 160  Q
    |||||| |||||||| ||| ||| ||  ||||||||| |||||||||||||||||| |  ||||| || || ||| |||| ||||||||||| ||| |||    
T  25750192 atatatctttctttcttttaactatccactctactttctcttataccaaacaaccaaaataatcccctcacattctactctttttctttcctcatacaat 25750291  T
Q  161 ctttcct 167  Q
    |||||||    
T  25750292 ctttcct 25750298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 170
Target Start/End: Complemental strand, 29272862 - 29272737
Alignment:
Q  45 atgtcaattactaaaaatatatgtttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttactttccactcattt 144  Q
    |||||||||||||||  || || ||||||| | |  ||||| |  |||||||| |||| ||||||||||||| | |||||||||| ||||  ||||  ||    
T  29272862 atgtcaattactaaatttagatctttcttttcatcaactttttattctactttctcttgtaccaaacaaccaaaacaatcctcttgctttttactctctt 29272763  T
Q  145 tctttccttatataatctttcctttc 170  Q
    |||||||||| | |||||||||||||    
T  29272762 tctttccttagacaatctttcctttc 29272737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 165
Target Start/End: Complemental strand, 41085078 - 41084981
Alignment:
Q  68 tttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttactttccactcattttctttccttatataatctttc 165  Q
    ||||||||||   |||||||  || ||||| |||||||||||||||||| |  ||||||||||||||| |||| |||||||||| || | ||||||||    
T  41085078 tttctttcctccaactttctattccactttctcttataccaaacaaccaaaataatcctcttactttctactctttttctttccctagacaatctttc 41084981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 44 - 172
Target Start/End: Original strand, 45225694 - 45225822
Alignment:
Q  44 tatgtcaattactaaaaatatatgtttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttactttccactcatt 143  Q
    |||||||||||| ||||||| || |||||||||||  | |||||  || ||||| | ||| |||||||||||| | |||||   | |||||||||||  |    
T  45225694 tatgtcaattacaaaaaatagatttttctttccttcaattttctaatccactttctattaaaccaaacaaccaaaacaatcacttcactttccactccct 45225793  T
Q  144 ttctttccttatataatctttcctttcac 172  Q
    ||||||||| |||  ||||||||||||||    
T  45225794 ttctttcctcataccatctttcctttcac 45225822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 168
Target Start/End: Original strand, 3765668 - 3765814
Alignment:
Q  22 attatttttattcagggttatatatgtcaattactaaaaatatatgtttctttcctttcactttct-tctctactttttcttataccaaacaaccagatc 120  Q
    ||||||||| || | |||||| |||||||| || ||||  ||  | |||||||||||  ||||||| |||| | ||| |||||||| ||||||||| | |    
T  3765668 attatttttgtttaaggttatttatgtcaactattaaatgtaggtctttctttccttcaactttctatctc-attttctcttatactaaacaaccaaaac 3765766  T
Q  121 aatcctcttactttccactcattttctttccttatataatctttcctt 168  Q
    | || |||||||||| | |||||||||||||||| | |||||||||||    
T  3765767 attcatcttactttctattcattttctttccttaaacaatctttcctt 3765814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 93 - 170
Target Start/End: Complemental strand, 45223689 - 45223612
Alignment:
Q  93 actttttcttataccaaacaaccagatcaatcctcttactttccactcattttctttccttatataatctttcctttc 170  Q
    ||||| |||||||||||||||| | | ||||||||| |||||| |||| ||| |||| || ||| |||||||||||||    
T  45223689 actttctcttataccaaacaactaaaacaatcctctcactttctactcttttacttttctcatacaatctttcctttc 45223612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 173
Target Start/End: Original strand, 45024740 - 45024808
Alignment:
Q  105 accaaacaaccagatcaatcctcttactttccactcattttctttccttatataatctttcctttcacc 173  Q
    |||||||||||| | ||||||  |  ||||||| ||  |||||||||| ||||||||||||||||||||    
T  45024740 accaaacaaccaaaacaatcccttcgctttccattctctttctttcctcatataatctttcctttcacc 45024808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 44 - 164
Target Start/End: Complemental strand, 2226 - 2106
Alignment:
Q  44 tatgtcaattactaaaaatatatgtttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttactttccactcatt 143  Q
    |||||||||||| |||  || || ||||||||||   |||||||  || |||||  ||| ||||||||||||| | ||||||||| |||||| |||| ||    
T  2226 tatgtcaattacaaaatgtagatctttctttcctccaactttctattccactttcccttgtaccaaacaaccaaaacaatcctctcactttctactcttt 2127  T
Q  144 ttctttccttatataatcttt 164  Q
    ||||||||||| | |||||||    
T  2126 ttctttccttagacaatcttt 2106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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