View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8587_low_13 (Length: 327)
Name: NF8587_low_13
Description: NF8587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8587_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 16 - 310
Target Start/End: Original strand, 494016 - 494311
Alignment:
| Q |
16 |
agacaaat-aaaatttacaacatggtttgtctacaaactaatttggatttttgcacactgctctatttgtcatgatttcgatcaacttggccgtgttatg |
114 |
Q |
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| T |
494016 |
agacaaatcaaaatttacaacacggtttgtctacaaactaatttggatttttgcacactgctctatttgtcatgatttcgatcaacttggctgtgttatg |
494115 |
T |
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| Q |
115 |
cacaacacttaatcagattatcaggtcacagatgtttattactattgttgttatatgcttttagatttgatgcatgtttgtatatctctttttcttaggt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
494116 |
cacaacacttaatcagattatcaggtcacagatgtttattactattgttgttatatgcttttagatttgatgcatgtttgtatatctctttttcttagat |
494215 |
T |
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| Q |
215 |
gttttcaaaagaagacaccaaggctctaaacttgtgcaggcgtatgatggaaagaggagaatgtccacccctcactgtagaagctgataaatctat |
310 |
Q |
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| T |
494216 |
gttttcaaaagaagacaccaaggctctaaacttgtgcaggcgtatgatggaaagaggagaatgtccacccctcactgtagaagctgataaatctat |
494311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 36 - 288
Target Start/End: Original strand, 501928 - 502177
Alignment:
| Q |
36 |
atggtttgtctacaaactaatttggatttttgcacactgctctatttgtcatgatttcgatcaacttggccgtgttatgcacaacacttaatcagattat |
135 |
Q |
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| T |
501928 |
atggtttgtctacaaactagtttggatttttgca-actgcactatttgtcatgatttagatcaacttggttgttttatgcacaatacttaatcagattat |
502026 |
T |
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| Q |
136 |
caggtcacagatgtttattactattgttgttatatgcttttagatttgatgcatgtttgtatatctctttttcttaggtgttttcaaaagaagacaccaa |
235 |
Q |
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| T |
502027 |
cagatcacagatgtttataaccattgttgttatatgcatttagatttgatgcctgtttgtata--tctttttctcaggtattatcaaaagaaggcaccaa |
502124 |
T |
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| Q |
236 |
ggctctaaacttgtgcaggcgtatgatggaaagaggagaatgtccacccctca |
288 |
Q |
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| T |
502125 |
ggctctaaacttgtgcacagatatgatggaaagaggagaatgtccacccctca |
502177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 37 - 288
Target Start/End: Original strand, 490247 - 490497
Alignment:
| Q |
37 |
tggtttgtctacaaactaatttggatttttgcacactgctctatttgtcatgatttcgatcaacttggccgtgttatgcacaacacttaatcagattatc |
136 |
Q |
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|||| ||||||||||||| |||||||||| ||||||||| |||||| | ||||||| ||| ||||| |||||||| |||||||||||||||||||| |
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| T |
490247 |
tggtctgtctacaaactagtttggattttggcacactgcactattttttatgatttggattaacttttttgtgttatgtgcaacacttaatcagattatc |
490346 |
T |
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| Q |
137 |
aggtcacagatgtttattactattgttgttatatgcttttagatttgatgcatgtttgtatatctctttttcttaggtgttttcaaaagaagacaccaag |
236 |
Q |
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| T |
490347 |
agagcacagatgtttataactactgttgttatatgcatttagatttgatgcatgttcgtatatat-tttttctcaggtcttatcaaaagaagacaccgag |
490445 |
T |
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| Q |
237 |
gctctaaacttgtgcaggcgtatgatggaaagaggagaatgtccacccctca |
288 |
Q |
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| T |
490446 |
actcttaacttgtgcagaagtatgatggaaagaggagaatgtccgcccctca |
490497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 41 - 183
Target Start/End: Original strand, 493092 - 493234
Alignment:
| Q |
41 |
ttgtctacaaactaatttggatttttgcacactgctctatttgtcatgatttcgatcaacttggccgtgttatgcacaacacttaatcagattatcaggt |
140 |
Q |
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||||||| |||||| |||||| |||| ||| ||| ||||| |||||||||| ||||||||| | |||||| | | ||||||||||||||||||| |
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| T |
493092 |
ttgtctataaactagtttggaatttttaacaatgcgctattcgtcatgatttggatcaactttgttgtgttacacgcttcacttaatcagattatcagag |
493191 |
T |
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| Q |
141 |
cacagatgtttattactattgttgttatatgcttttagatttg |
183 |
Q |
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||||||||||||| ||| ||||||| |||| |||||||||| |
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| T |
493192 |
cacagatgtttataactcctgttgtttcatgcatttagatttg |
493234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 280
Target Start/End: Original strand, 499006 - 499129
Alignment:
| Q |
149 |
tttattactattgttgttatatgcttttagatttgatgcatgtttgtatatctctttttcttaggtgttttcaaaagaagacaccaaggctctaaacttg |
248 |
Q |
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| T |
499006 |
tttataacttttgttgttttatgcatttagatttgatgcaagtttgtatatctc--------atgtcttatcgaaagaagactttgagactctaaacttg |
499097 |
T |
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| Q |
249 |
tgcaggcgtatgatggaaagaggagaatgtcc |
280 |
Q |
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|||| ||||||||||||||||||||||||| |
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| T |
499098 |
agcagaagtatgatggaaagaggagaatgtcc |
499129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 96; Significance: 5e-47; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 86 - 288
Target Start/End: Complemental strand, 19145627 - 19145427
Alignment:
| Q |
86 |
atgatttcgatcaacttggccgtgttatgcacaacacttaatcagattatcaggtcacagatgtttattactattgttgttatatgcttttagatttgat |
185 |
Q |
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| T |
19145627 |
atgatttagatcaacttggttgttttatgcacaatacttaatcagattatcagagaacagatgtttataaccattgttgttatatgcatttagatttgat |
19145528 |
T |
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| Q |
186 |
gcatgtttgtatatctctttttcttaggtgttttcaaaagaagacaccaaggctctaaacttgtgcaggcgtatgatggaaagaggagaatgtccacccc |
285 |
Q |
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| ||| | |||| ||||||||| |||| || |||||||||| |||| || ||| ||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
19145527 |
gtctgtctctata--tctttttctcaggtattatcaaaagaaggcaccgagtctcaaaacttgtgcacacgtatgatggaaagaggagaatgtccacccc |
19145430 |
T |
|
| Q |
286 |
tca |
288 |
Q |
| |
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||| |
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| T |
19145429 |
tca |
19145427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 86 - 288
Target Start/End: Complemental strand, 19124636 - 19124433
Alignment:
| Q |
86 |
atgatttcgatcaacttggccgtgttatgcacaacacttaatcagattatcaggtcacagatgtttattactattgttgttatatgcttttagatttgat |
185 |
Q |
| |
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||||||| ||||||||||| || |||||||||| |||||||||||||||||| ||||||||||||| || ||||||||||||||| ||||||||| || |
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| T |
19124636 |
atgatttagatcaacttggttgttttatgcacaatacttaatcagattatcagagcacagatgtttataaccattgttgttatatgcatttagatttaat |
19124537 |
T |
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| Q |
186 |
gcatgtttgtatatctctttttcttaggtgttttcaaaagaagacaccaaggctctaaacttgtgcaggcgtatgatggaaagaggag---aatgtccac |
282 |
Q |
| |
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|| ||| |||||| ||||||||| || | | |||||||||| |||| || ||| ||||||||||| |||||| |||||||||||| ||||||||| |
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| T |
19124536 |
gcctgtctgtata--tctttttctcagatatcatcaaaagaaggcaccgagtctcaaaacttgtgcacacgtatggtggaaagaggagaataatgtccac |
19124439 |
T |
|
| Q |
283 |
ccctca |
288 |
Q |
| |
|
|||||| |
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| T |
19124438 |
ccctca |
19124433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 36 - 184
Target Start/End: Complemental strand, 19119016 - 19118868
Alignment:
| Q |
36 |
atggtttgtctacaaactaatttgga-tttttgcacactgctctatttgtcatgatttcgatcaacttggccgtgttatgcacaacacttaatcagatta |
134 |
Q |
| |
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||||||||||||||||||| |||||| |||||||| ||||| |||||||||||||| | ||| ||||||| || |||||||||| |||||||||||||| |
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| T |
19119016 |
atggtttgtctacaaactagtttggaatttttgca-actgcactatttgtcatgatctagattaacttggttgttttatgcacaatacttaatcagatta |
19118918 |
T |
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| Q |
135 |
tcaggtcacagatgtttattactattgttgttatatgcttttagatttga |
184 |
Q |
| |
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|||| ||||||||||||| || ||||||||||||| | ||||||||||| |
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| T |
19118917 |
tcagagcacagatgtttataaccattgttgttatatacatttagatttga |
19118868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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