View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8587_low_15 (Length: 298)

Name: NF8587_low_15
Description: NF8587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8587_low_15
NF8587_low_15
[»] chr1 (26 HSPs)
chr1 (19-286)||(10979189-10979456)
chr1 (19-286)||(10903294-10903558)
chr1 (22-286)||(11005003-11005267)
chr1 (19-286)||(10914454-10914721)
chr1 (19-286)||(11010755-11011022)
chr1 (19-286)||(11028585-11028854)
chr1 (20-286)||(11033046-11033312)
chr1 (20-255)||(10974142-10974377)
chr1 (19-286)||(11007593-11007860)
chr1 (19-173)||(10901567-10901721)
chr1 (149-286)||(10993814-10993951)
chr1 (22-145)||(9319908-9320031)
chr1 (25-215)||(8999599-8999789)
chr1 (31-215)||(8964448-8964632)
chr1 (22-145)||(9318271-9318394)
chr1 (22-145)||(9350225-9350348)
chr1 (28-215)||(9399568-9399755)
chr1 (25-143)||(9082523-9082641)
chr1 (22-155)||(9384221-9384354)
chr1 (25-141)||(9096793-9096909)
chr1 (28-215)||(9432824-9433011)
chr1 (251-286)||(10932835-10932870)
chr1 (25-215)||(8874052-8874242)
chr1 (89-163)||(9488538-9488612)
chr1 (28-216)||(9486176-9486364)
chr1 (247-283)||(10901521-10901557)
[»] chr6 (1 HSPs)
chr6 (22-145)||(15927177-15927300)
[»] chr3 (1 HSPs)
chr3 (22-145)||(9159598-9159721)


Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 286
Target Start/End: Complemental strand, 10979456 - 10979189
Alignment:
Q  19 tcattaactgcagcaagaggaaccattggatatatggcccctgaactattctacagaaatgttggctcaatatcttacaaagctgatgtctatagctttg 118  Q
    |||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||    
T  10979456 tcattaactgcagcaagagggaccattggatacatggctcctgaactattctacagaaatgttggcacaatatcttacaaagctgatgtatatagttttg 10979357  T
Q  119 ggatgttgttaatggagatggcaagtagaaggaagaacttgaatgcattagctgagcaatctagccaaatttatttccctttttggatttatgatcagat 218  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||   |    
T  10979356 ggatgttgttgatggagatggcaagtagaaggaggaacttgaatgcaatggctgagcaatctagccaaatttatttccctttttggatatatgatcgatt 10979257  T
Q  219 acatgatggaagggaagtaacgattggaaatgacacagatcaggaaatgaaattggcaaagaaaatga 286  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  10979256 acatgatggaagggaagtaacgattgaaaatgacacagatcaggaaataaaattggcaaagaaaatga 10979189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 19 - 286
Target Start/End: Complemental strand, 10903558 - 10903294
Alignment:
Q  19 tcattaactgcagcaagaggaaccattggatatatggcccctgaactattctacagaaatgttggctcaatatcttacaaagctgatgtctatagctttg 118  Q
    |||||||||||||||||||||||||||||||||   ||||||||||| |||||||||||||||||    |||||||||||||||||||||||||||||||    
T  10903558 tcattaactgcagcaagaggaaccattggatat---gcccctgaacttttctacagaaatgttggaatgatatcttacaaagctgatgtctatagctttg 10903462  T
Q  119 ggatgttgttaatggagatggcaagtagaaggaagaacttgaatgcattagctgagcaatctagccaaatttatttccctttttggatttatgatcagat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||   |    
T  10903461 ggatgttgttaatggagatggcaagtagaaggaagaacttgaatgcattggccgaacaatctagccaaatttatttccctttttggatttatgatcgatt 10903362  T
Q  219 acatgatggaagggaagtaacgattggaaatgacacagatcaggaaatgaaattggcaaagaaaatga 286  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  10903361 acatgatggaagggaagtaactattgaaaatgacacagatcaggaaatgaaattggcaaagaaaatga 10903294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 22 - 286
Target Start/End: Original strand, 11005003 - 11005267
Alignment:
Q  22 ttaactgcagcaagaggaaccattggatatatggcccctgaactattctacagaaatgttggctcaatatcttacaaagctgatgtctatagctttggga 121  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||    
T  11005003 ttaactgcagcaagaggaaccattggatacatggcccctgaactattctacagaaatgtcggcacaatatctcacaaagctgatgtctatagctttggga 11005102  T
Q  122 tgttgttaatggagatggcaagtagaaggaagaacttgaatgcattagctgagcaatctagccaaatttatttccctttttggatttatgatcagataca 221  Q
    ||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||| |||| ||||    
T  11005103 tgttgttgatggagatggcaagtagaaggaagaacttgaatccattggctgagcaatcttgccaaatttatttccctttttggatttatggtcagttaca 11005202  T
Q  222 tgatggaagggaagtaacgattggaaatgacacagatcaggaaatgaaattggcaaagaaaatga 286  Q
    ||||||||| |||||||| ||||  |||||||||||| | |||||||||||||||||||||||||    
T  11005203 tgatggaagtgaagtaacaattgagaatgacacagatgaagaaatgaaattggcaaagaaaatga 11005267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 19 - 286
Target Start/End: Complemental strand, 10914721 - 10914454
Alignment:
Q  19 tcattaactgcagcaagaggaaccattggatatatggcccctgaactattctacagaaatgttggctcaatatcttacaaagctgatgtctatagctttg 118  Q
    |||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||| ||| |||||||| ||||||||||||| ||||||||||    
T  10914721 tcattaactgcagcaagaggaaccatcggatatatggcccctgaattattctatagaaatgtcggcacaatatctcacaaagctgatgtatatagctttg 10914622  T
Q  119 ggatgttgttaatggagatggcaagtagaaggaagaacttgaatgcattagctgagcaatctagccaaatttatttccctttttggatttatgatcagat 218  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||| ||||||||  ||||||||||||||||||||||||||||||   |    
T  10914621 ggatgttgttaatggagatggcaagcagaaggaagaatttgaatgcattggctgatcaatctagtgaaatttatttccctttttggatttatgatcgatt 10914522  T
Q  219 acatgatggaagggaagtaacgattggaaatgacacagatcaggaaatgaaattggcaaagaaaatga 286  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  10914521 acatgatggaagggaagtaactattgaaaatgacacagatcaggaaatgaaattggcaaagaaaatga 10914454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 286
Target Start/End: Complemental strand, 11011022 - 11010755
Alignment:
Q  19 tcattaactgcagcaagaggaaccattggatatatggcccctgaactattctacagaaatgttggctcaatatcttacaaagctgatgtctatagctttg 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||    
T  11011022 tcattaactgcagcaagaggaaccattggatatatggcccctgaactattctacagaaatgttggcacaatatcttacaaagctgatgtatatagttttg 11010923  T
Q  119 ggatgttgttaatggagatggcaagtagaaggaagaacttgaatgcattagctgagcaatctagccaaatttatttccctttttggatttatgatcagat 218  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||| |  |    
T  11010922 ggatgttgttgatggagatggcaagtagaaggaagaacttgaatgcattggctgagcaatccagccaaatttattttcctttttggatttatgataaatt 11010823  T
Q  219 acatgatggaagggaagtaacgattggaaatgacacagatcaggaaatgaaattggcaaagaaaatga 286  Q
     ||||||||||| |||||||| ||||  || ||||||||||||||||||||  | |||||||||||||    
T  11010822 tcatgatggaagtgaagtaacaattgagaacgacacagatcaggaaatgaagctagcaaagaaaatga 11010755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 286
Target Start/End: Original strand, 11028585 - 11028854
Alignment:
Q  19 tcattaactgcagcaagaggaaccattggatatatggcccctgaactattctacagaaatgttggctcaatatcttacaaagctgatgtctatagctttg 118  Q
    |||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  11028585 tcattaactgcagcaagaagaaccattggatacatggcccctgaactattctatagaaatgttggcacaatatcttacaaagctgatgtctatagctttg 11028684  T
Q  119 ggatgttgttaatggagatggcaagtagaaggaagaacttgaatgcattagctgagcaatctagccaaatttatttccctttttggatttatgatcagat 218  Q
    ||||||||||||||||||| || | |||||||||||| | ||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||   |    
T  11028685 ggatgttgttaatggagattgcgaatagaaggaagaattagaatgcattggctgaacaatctagccaaatttatttccctttctggatttatgatcgatt 11028784  T
Q  219 acatgatggaagggaag--taacgattggaaatgacacagatcaggaaatgaaattggcaaagaaaatga 286  Q
    |||||||||||||||||  || | |||| |||||||||||||||||||||||||||||||||||||||||    
T  11028785 acatgatggaagggaagtatatctattgaaaatgacacagatcaggaaatgaaattggcaaagaaaatga 11028854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 20 - 286
Target Start/End: Complemental strand, 11033312 - 11033046
Alignment:
Q  20 cattaactgcagcaagaggaaccattggatatatggcccctgaactattctacagaaatgttggctcaatatcttacaaagctgatgtctatagctttgg 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||| ||||| |||||    
T  11033312 cattaactgcagcaagaggaaccattggatatatggcccctgaactattctaccgaaatgtcggcacaatatcttacaaagctgatgtttatagttttgg 11033213  T
Q  120 gatgttgttaatggagatggcaagtagaaggaagaacttgaatgcattagctgagcaatctagccaaatttatttccctttttggatttatgatcagata 219  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||| ||||| ||||| ||||| |||||||||||||||||| ||||||||||| ||    
T  11033212 gatgttgttgatggagatggcaaatagaaggaagaacttgaatgcattggctgatcaatcaagccagatttatttccctttttgggtttatgatcagtta 11033113  T
Q  220 catgatggaagggaagtaacgattggaaatgacacagatcaggaaatgaaattggcaaagaaaatga 286  Q
    || |||||||||||| | || |||   ||||| ||| |||| |||||||||||||||||||||||||    
T  11033112 caagatggaagggaaatgacaattctgaatgatacaaatcatgaaatgaaattggcaaagaaaatga 11033046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 20 - 255
Target Start/End: Complemental strand, 10974377 - 10974142
Alignment:
Q  20 cattaactgcagcaagaggaaccattggatatatggcccctgaactattctacagaaatgttggctcaatatcttacaaagctgatgtctatagctttgg 119  Q
    |||||||||| ||||||||||| |||||||| |||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  10974377 cattaactgctgcaagaggaacgattggatacatggcccctgaactgttctacagaaatattggcacaatatcttacaaagctgatgtctatagctttgg 10974278  T
Q  120 gatgttgttaatggagatggcaagtagaaggaagaacttgaatgcattagctgagcaatctagccaaatttatttccctttttggatttatgatcagata 219  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||| || || |||||||||||||||||||||||||| |||||||||||||   ||    
T  10974277 gatgttgttaatggagatggcgagtagaaggaagaatttgaatgcattggccgatcaatctagccaaatttatttccctttctggatttatgatcgatta 10974178  T
Q  220 catgatggaagggaagtaacgattggaaatgacaca 255  Q
    |||||||||||||||||| | |||| ||||||||||    
T  10974177 catgatggaagggaagtatctattgaaaatgacaca 10974142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 19 - 286
Target Start/End: Complemental strand, 11007860 - 11007593
Alignment:
Q  19 tcattaactgcagcaagaggaaccattggatatatggcccctgaactattctacagaaatgttggctcaatatcttacaaagctgatgtctatagctttg 118  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||| | |||||||||||||||||||| ||||| ||||    
T  11007860 tcattaactgcagcaagaggaaccattggatacatggcccctgaactattctaccgaaatgtcggcacgatatcttacaaagctgatgtttatagttttg 11007761  T
Q  119 ggatgttgttaatggagatggcaagtagaaggaagaacttgaatgcattagctgagcaatctagccaaatttatttccctttttggatttatgatcagat 218  Q
    |||||||||||||||||||||||| |||||||||||||||| ||| ||| ||||  |||||||||||  ||||||||||||||||| ||||||||||| |    
T  11007760 ggatgttgttaatggagatggcaaatagaaggaagaacttggatgtattggctggtcaatctagccaggtttatttccctttttgggtttatgatcagtt 11007661  T
Q  219 acatgatggaagggaagtaacgattggaaatgacacagatcaggaaatgaaattggcaaagaaaatga 286  Q
    ||| |||||||| ||| |||| ||||  ||||  ||| |||| || ||||||||||||||||||||||    
T  11007660 acaagatggaagagaaataacaattgagaatgctacaaatcatgagatgaaattggcaaagaaaatga 11007593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 19 - 173
Target Start/End: Complemental strand, 10901721 - 10901567
Alignment:
Q  19 tcattaactgcagcaagaggaaccattggatatatggcccctgaactattctacagaaatgttggctcaatatcttacaaagctgatgtctatagctttg 118  Q
    |||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||| |||||||| ||||||||||||||||||| ||||    
T  10901721 tcattaacagcagcaagaggaaccattggatacatggcccctgaattattctacagaaatgtcggcacaatatctcacaaagctgatgtctatagttttg 10901622  T
Q  119 ggatgttgttaatggagatggcaagtagaaggaagaacttgaatgcattagctga 173  Q
    | |||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  10901621 gaatgttgttgatggagatggcaagtagaaggaagaacttgaatgcattggctga 10901567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 149 - 286
Target Start/End: Original strand, 10993814 - 10993951
Alignment:
Q  149 ggaagaacttgaatgcattagctgagcaatctagccaaatttatttccctttttggatttatgatcagatacatgatggaagggaagtaacgattggaaa 248  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||| ||||  ||    
T  10993814 ggaagaacttgaatgcattagctgagcaatctagccaaatttattttcctttttggatttatgatcagttacatgatggaagtgaagtaacaattgagaa 10993913  T
Q  249 tgacacagatcaggaaatgaaattggcaaagaaaatga 286  Q
    |||||||||| | |||||||||||||||||||||||||    
T  10993914 tgacacagatgaagaaatgaaattggcaaagaaaatga 10993951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 145
Target Start/End: Complemental strand, 9320031 - 9319908
Alignment:
Q  22 ttaactgcagcaagaggaaccattggatatatggcccctgaactattctacagaaatgttggctcaatatcttacaaagctgatgtctatagctttggga 121  Q
    |||||||||||||||||||| |||||||||||||| |||||| | ||||||| |||| ||||   | |||| ||||| |||||||| |||||||| || |    
T  9320031 ttaactgcagcaagaggaacaattggatatatggctcctgaattgttctacaaaaatattggaggagtatcctacaaggctgatgtatatagcttcggaa 9319932  T
Q  122 tgttgttaatggagatggcaagta 145  Q
    || | || ||||| ||||||||||    
T  9319931 tgcttttgatggaaatggcaagta 9319908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 215
Target Start/End: Complemental strand, 8999789 - 8999599
Alignment:
Q  25 actgcagcaagaggaaccattggatatatggcccctgaactattctacagaaatgttggctcaatatcttacaaagctgatgtctatagctttgggatgt 124  Q
    ||||| |||||||| ||||||||||||||||| || ||| | ||||| | |||| ||||   | | ||||| || |||||||| |||||||||||||||     
T  8999789 actgcggcaagaggtaccattggatatatggctccagaattgttctataaaaatattgggggagtgtcttataaggctgatgtttatagctttgggatgc 8999690  T
Q  125 tgttaatggagatggcaagtagaaggaagaacttgaatgcattagctgagcaatctagccaaatttatttccctttttggatttatgatca 215  Q
    | || |||||||||||| ||| |||||| ||| | ||||    ||| ||||| || || ||  ||||||| ||||| ||||||||||||||    
T  8999689 ttttgatggagatggcaggtaaaaggaaaaacctaaatgtccaagcggagcattcaagtcagctttattttcctttatggatttatgatca 8999599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 31 - 215
Target Start/End: Complemental strand, 8964632 - 8964448
Alignment:
Q  31 gcaagaggaaccattggatatatggcccctgaactattctacagaaatgttggctcaatatcttacaaagctgatgtctatagctttgggatgttgttaa 130  Q
    |||||||| ||||||||||||||||| || ||| | ||||| | |||| ||||   | | || || || |||||||| ||||||||||||||| | || |    
T  8964632 gcaagaggtaccattggatatatggctccagaattgttctataaaaatattgggggagtgtcctataaggctgatgtttatagctttgggatgcttttga 8964533  T
Q  131 tggagatggcaagtagaaggaagaacttgaatgcattagctgagcaatctagccaaatttatttccctttttggatttatgatca 215  Q
    ||||||||||| ||| |||||| ||| | |||||   ||| ||||| || || ||  ||||||| ||||| ||||||||||||||    
T  8964532 tggagatggcaggtaaaaggaaaaacctaaatgcccaagcggagcattcaagtcagctttattttcctttatggatttatgatca 8964448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 145
Target Start/End: Original strand, 9318271 - 9318394
Alignment:
Q  22 ttaactgcagcaagaggaaccattggatatatggcccctgaactattctacagaaatgttggctcaatatcttacaaagctgatgtctatagctttggga 121  Q
    ||||||||||| |||||||| |||||||| ||||| |||||| | ||||||| |||| ||||   | |||| ||||| || ||||| ||||||||||| |    
T  9318271 ttaactgcagctagaggaacaattggatacatggctcctgaattgttctacaaaaatattggaggagtatcctacaaggccgatgtatatagctttggaa 9318370  T
Q  122 tgttgttaatggagatggcaagta 145  Q
    || | || ||||| ||||||||||    
T  9318371 tgcttttgatggaaatggcaagta 9318394  T

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Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 145
Target Start/End: Complemental strand, 9350348 - 9350225
Alignment:
Q  22 ttaactgcagcaagaggaaccattggatatatggcccctgaactattctacagaaatgttggctcaatatcttacaaagctgatgtctatagctttggga 121  Q
    |||||||||||||||||||| |||||||||||||| |||||  | ||||||| |||| ||||   | |||| ||||| |||||||| |||||||| || |    
T  9350348 ttaactgcagcaagaggaacaattggatatatggctcctgagttgttctacaaaaatattggaggagtatcctacaaggctgatgtatatagcttcggaa 9350249  T
Q  122 tgttgttaatggagatggcaagta 145  Q
    || | || ||||| || |||||||    
T  9350248 tgcttttgatggaaatcgcaagta 9350225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 215
Target Start/End: Complemental strand, 9399755 - 9399568
Alignment:
Q  28 gcagcaagaggaaccattggatatatggcccctgaactattctacagaaatgttggctcaatatcttacaaagctgatgtctatagctttgggatgttgt 127  Q
    |||||||||||||| ||||| || ||||| |||||||| |||| |  |||| ||||   |||||| || || |||||||| ||||||||||| ||| | |    
T  9399755 gcagcaagaggaacaattggttacatggctcctgaactgttcttccaaaatattgggggaatatcatataaggctgatgtgtatagctttggtatgcttt 9399656  T
Q  128 taatggagatggcaagtagaaggaagaacttgaatgcattagctgagcaatctagccaaatttatttccctttttggatttatgatca 215  Q
    | || || || |||||||| || |  || |||||| ||   |||||||| || || ||| |||||||||| |||||||||||||||||    
T  9399655 tgattgaaattgcaagtaggagaagaaatttgaattcacatgctgagcattcaagtcaactttatttccccttttggatttatgatca 9399568  T

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Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 143
Target Start/End: Original strand, 9082523 - 9082641
Alignment:
Q  25 actgcagcaagaggaaccattggatatatggcccctgaactattctacagaaatgttggctcaatatcttacaaagctgatgtctatagctttgggatgt 124  Q
    |||||||||||||| || |||||||||||||| |||||  ||||||||| |||| | ||   | | || ||||| |||||||| ||||| |||||||||     
T  9082523 actgcagcaagaggtacaattggatatatggctcctgagttattctacaaaaatatagggggagtgtcgtacaaggctgatgtttatagttttgggatgc 9082622  T
Q  125 tgttaatggagatggcaag 143  Q
    | || ||||||||||||||    
T  9082623 ttttgatggagatggcaag 9082641  T

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Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 155
Target Start/End: Complemental strand, 9384354 - 9384221
Alignment:
Q  22 ttaactgcagcaagaggaaccattggatatatggcccctgaactattctacagaaatgttggctcaatatcttacaaagctgatgtctatagctttggga 121  Q
    |||||||| |||||||||||  | || || ||||| |||||||| ||||||| |||| ||||   | | |||||||| |||||||| ||||||||||| |    
T  9384354 ttaactgcggcaagaggaactttgggttacatggctcctgaactgttctacaaaaatattggtggagtgtcttacaaggctgatgtatatagctttggaa 9384255  T
Q  122 tgttgttaatggagatggcaagtagaaggaagaa 155  Q
    || | || ||||| |||||| ||| |||||||||    
T  9384254 tgcttttgatggaaatggcaggtaaaaggaagaa 9384221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 25 - 141
Target Start/End: Original strand, 9096793 - 9096909
Alignment:
Q  25 actgcagcaagaggaaccattggatatatggcccctgaactattctacagaaatgttggctcaatatcttacaaagctgatgtctatagctttgggatgt 124  Q
    ||||| |||||||| || |||||||||||||| || ||| | ||||||| |||| ||||   | | || || ||||||||||| |||||||||||||||     
T  9096793 actgctgcaagaggtacaattggatatatggctccagaattgttctacaaaaatattgggggagtttcctataaagctgatgtttatagctttgggatgc 9096892  T
Q  125 tgttaatggagatggca 141  Q
    | || ||||||||||||    
T  9096893 ttttgatggagatggca 9096909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 215
Target Start/End: Original strand, 9432824 - 9433011
Alignment:
Q  28 gcagcaagaggaaccattggatatatggcccctgaactattctacagaaatgttggctcaatatcttacaaagctgatgtctatagctttgggatgttgt 127  Q
    |||||||||||||| ||||| || ||||| |||||| | ||||||  |||| ||||   ||||||  |||| || ||||| ||||| ||||| ||| | |    
T  9432824 gcagcaagaggaacaattggttacatggctcctgaattgttctaccaaaatattgggagaatatcacacaaggccgatgtgtatagttttggaatgcttt 9432923  T
Q  128 taatggagatggcaagtagaaggaagaacttgaatgcattagctgagcaatctagccaaatttatttccctttttggatttatgatca 215  Q
    | || || || ||||||||||| |  || |||||| ||   |||||||| || || ||| |||||||||| |||||||||||||||||    
T  9432924 tgattgaaatcgcaagtagaagaagaaatttgaattcacatgctgagcattcaagtcaactttatttccccttttggatttatgatca 9433011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 251 - 286
Target Start/End: Complemental strand, 10932870 - 10932835
Alignment:
Q  251 acacagatcaggaaatgaaattggcaaagaaaatga 286  Q
    ||||||||||||||||||||||||||||||||||||    
T  10932870 acacagatcaggaaatgaaattggcaaagaaaatga 10932835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 215
Target Start/End: Original strand, 8874052 - 8874242
Alignment:
Q  25 actgcagcaagaggaaccattggatatatggcccctgaactattctacagaaatgttggctcaatatcttacaaagctgatgtctatagctttgggatgt 124  Q
    ||||| |||||||| ||||||||||||||||| || ||| | || || | |||| ||||   | | || || || |||||||| ||||| |||||||||     
T  8874052 actgcggcaagaggtaccattggatatatggctccagaattgttttataaaaatattggtggagtgtcctataaggctgatgtttatagttttgggatgc 8874151  T
Q  125 tgttaatggagatggcaagtagaaggaagaacttgaatgcattagctgagcaatctagccaaatttatttccctttttggatttatgatca 215  Q
    | || |||| ||||||| ||| |||||| ||| | |||||   ||||||||| || || ||  ||||||| ||||| ||||||||||||||    
T  8874152 ttttgatggtgatggcaggtaaaaggaaaaacctaaatgcccaagctgagcattcaagtcagctttattttcctttatggatttatgatca 8874242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 163
Target Start/End: Complemental strand, 9488612 - 9488538
Alignment:
Q  89 tatcttacaaagctgatgtctatagctttgggatgttgttaatggagatggcaagtagaaggaagaacttgaatg 163  Q
    |||| |||||||| ||||| ||||||||||| |||||||||||||| ||||| ||||| || | |||| ||||||    
T  9488612 tatcgtacaaagcagatgtttatagctttggaatgttgttaatggaaatggcgagtaggagaaggaacatgaatg 9488538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 216
Target Start/End: Original strand, 9486176 - 9486364
Alignment:
Q  28 gcagcaagaggaaccattggatatatggcccctgaactattctacagaaatgttggctcaatatcttacaaagctgatgtctatagctttgggatgttgt 127  Q
    |||||||||||||| || || || ||||| |||||| | ||||||  |||| | ||   |||||| ||||| |||||  | ||||||||||| ||| | |    
T  9486176 gcagcaagaggaacaatcggttacatggctcctgaattgttctaccaaaatatcggaggaatatcatacaaggctgacatgtatagctttggaatgcttt 9486275  T
Q  128 taatggagatggcaagtagaaggaagaacttgaatgcattagctgagcaatctagccaaatttatttccctttttggatttatgatcag 216  Q
    | || || |||||||||||||| |  || |||||| ||   |||||||| || || ||| |||| || || ||||||||||||||||||    
T  9486276 tgattgaaatggcaagtagaagaagaaatttgaatacacatgctgagcattcaagtcaactttactttcccttttggatttatgatcag 9486364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 283
Target Start/End: Complemental strand, 10901557 - 10901521
Alignment:
Q  247 aatgacacagatcaggaaatgaaattggcaaagaaaa 283  Q
    |||||||||||| | ||||||||||||||||||||||    
T  10901557 aatgacacagatgaagaaatgaaattggcaaagaaaa 10901521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 145
Target Start/End: Original strand, 15927177 - 15927300
Alignment:
Q  22 ttaactgcagcaagaggaaccattggatatatggcccctgaactattctacagaaatgttggctcaatatcttacaaagctgatgtctatagctttggga 121  Q
    |||||||||||||||||||| |||||||| ||||| |||||| ||||||||| |||| ||||   | | || || || || ||||| ||||||||||| |    
T  15927177 ttaactgcagcaagaggaacgattggatacatggctcctgaattattctacaaaaatattggaggagtttcgtataaggccgatgtatatagctttggaa 15927276  T
Q  122 tgttgttaatggagatggcaagta 145  Q
    || | || ||||| ||||||||||    
T  15927277 tgcttttgatggaaatggcaagta 15927300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 145
Target Start/End: Complemental strand, 9159721 - 9159598
Alignment:
Q  22 ttaactgcagcaagaggaaccattggatatatggcccctgaactattctacagaaatgttggctcaatatcttacaaagctgatgtctatagctttggga 121  Q
    |||||||||||||||||||| ||||| |||||||| || ||  | ||||||| |||| ||||   | |||| ||||| |||||||| ||||| ||||| |    
T  9159721 ttaactgcagcaagaggaacaattggttatatggctcccgagttgttctacaaaaatattggtggagtatcatacaaggctgatgtttatagttttggaa 9159622  T
Q  122 tgttgttaatggagatggcaagta 145  Q
    || | || ||||| ||||||||||    
T  9159621 tgcttttgatggaaatggcaagta 9159598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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