View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8587_low_16 (Length: 288)
Name: NF8587_low_16
Description: NF8587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8587_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 50244514 - 50244785
Alignment:
| Q |
1 |
tgcacagttagattttgcattgtgggagccacctcatggtccatacaagatgttcaattatccttggagaagctatgtcaaacttagtggagcattgagg |
100 |
Q |
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| T |
50244514 |
tgcacagttagattttgcattgtgggagccacctcatggtccatacaagatgttcaattatccttggagaagctatgtcaaacttagtggagcattgagg |
50244613 |
T |
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| Q |
101 |
cattgtgctctcatggtcatggcaatgcatggatgcatactttcagaaatacaggtactataagaataacttctcttttgtgatttgtgttacatttaag |
200 |
Q |
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| T |
50244614 |
cattgtgctctcatggtcatggcaatgcatggatgcatactttcagaaatacaggtactataagaataacttctcttttgtgatttgtgttacatttaag |
50244713 |
T |
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| Q |
201 |
cttctcagtaannnnnnnnnnnnatgcttgataaccg-ttgtaagggggaaagcatttgtccatgcatgaac |
271 |
Q |
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| T |
50244714 |
cttctcagtaatttttgttttttatgcttgataaccgtttgtaagggggaaagcatttgtccatgcatgaac |
50244785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 23 - 159
Target Start/End: Original strand, 31808364 - 31808500
Alignment:
| Q |
23 |
tgggagccacctcatggtccatacaagatgttcaattatccttggagaagctatgtcaaacttagtggagcattgaggcattgtgctctcatggtcatgg |
122 |
Q |
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| T |
31808364 |
tgggagccacctcatggtcgttacaaaatgtttagatatccatggaaaaattatgttaaagtaagtggagcactcaggcattgtgcatttatggtgatgg |
31808463 |
T |
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| Q |
123 |
caatgcatggatgcatactttcagaaatacaggtact |
159 |
Q |
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| T |
31808464 |
ctatgcatggatgtatactttctgaaatacaggtact |
31808500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 23 - 159
Target Start/End: Complemental strand, 43822497 - 43822361
Alignment:
| Q |
23 |
tgggagccacctcatggtccatacaagatgttcaattatccttggagaagctatgtcaaacttagtggagcattgaggcattgtgctctcatggtcatgg |
122 |
Q |
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| T |
43822497 |
tgggaaccacctcatggtaaatacaaaatgcttaactatccatggaagaattatgtcaaagtaagtggggctctaagacattgtgcattcatggtcatgg |
43822398 |
T |
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| Q |
123 |
caatgcatggatgcatactttcagaaatacaggtact |
159 |
Q |
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| T |
43822397 |
ccatgcatggatgcatactttctgaaattcaggtact |
43822361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 113 - 159
Target Start/End: Complemental strand, 43815207 - 43815161
Alignment:
| Q |
113 |
atggtcatggcaatgcatggatgcatactttcagaaatacaggtact |
159 |
Q |
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| T |
43815207 |
atggtcatggccatgcatggatgcatactttctgaaatacaggtact |
43815161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 159
Target Start/End: Complemental strand, 43829988 - 43829943
Alignment:
| Q |
114 |
tggtcatggcaatgcatggatgcatactttcagaaatacaggtact |
159 |
Q |
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| T |
43829988 |
tggttatggccatgcatggatgcatactttctgaaattcaggtact |
43829943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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