View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8587_low_19 (Length: 242)
Name: NF8587_low_19
Description: NF8587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8587_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 9437618 - 9437849
Alignment:
| Q |
1 |
tagaattatataatccgaaataatccaggaactatttttggattataatctgaatgcatgttctatgtgttttgaatgaccagcaatttcagctcccgga |
100 |
Q |
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|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
9437618 |
tagaattatataatccgaaataatccaggaacgatttt-ggattataatctgaatgcatgttctatgtgttttgaatgaccagcaatttcagctcccaga |
9437716 |
T |
|
| Q |
101 |
cttcccttgattgtcattacagtctatgtttacattttttcaataaatacccactcattctttataatttttaattctagatcgcactatgtccttttat |
200 |
Q |
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||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
9437717 |
cttcctttgattgtcattacagtctatgtttacatttttccaataaatacccactcattctttataatttttaattctagatcacactatgtccttttat |
9437816 |
T |
|
| Q |
201 |
ttcttacttttcttttgagtcatttatgatgtc |
233 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
9437817 |
ttcttacttttcttttgagtcatttatgatgtc |
9437849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 107 - 233
Target Start/End: Original strand, 241435 - 241561
Alignment:
| Q |
107 |
ttgattgtcattacagtctatgtttacattttttcaataaatacccactcattctttataatttttaattctagatcgcactatgtccttttatttctta |
206 |
Q |
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||||||||| ||||| |||||||||| ||||| | |||||||| | ||||||||| | ||||| | |||| | || || | | | | ||||||| || |
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| T |
241435 |
ttgattgtcgttacaatctatgtttatattttacctataaatactcgctcattcttcacaatttctcattccaactcacattctcttatcttatttccta |
241534 |
T |
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| Q |
207 |
cttttcttttgagtcatttatgatgtc |
233 |
Q |
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| T |
241535 |
cttttcttttgagtcatttatgatgtc |
241561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 164
Target Start/End: Complemental strand, 31805916 - 31805870
Alignment:
| Q |
118 |
tacagtctatgtttacattttttcaataaatacccactcattcttta |
164 |
Q |
| |
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|||||||||||||| |||||| | |||||||||||||||||||||| |
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| T |
31805916 |
tacagtctatgtttgcattttgcctataaatacccactcattcttta |
31805870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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