View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8587_low_2 (Length: 582)
Name: NF8587_low_2
Description: NF8587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8587_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 146; Significance: 1e-76; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 13 - 166
Target Start/End: Complemental strand, 34355163 - 34355010
Alignment:
| Q |
13 |
ataatcatattcgttttgtggttgaataatcttgtgagttatttacagcagcaagtgtttcaattatcgtctcatttagctatcaatttgtgattattgt |
112 |
Q |
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| T |
34355163 |
ataattatattcgttttgtagttgaataatcttgtgagttatttacagcagcaagtgtttcaattatcgtctcatttagctatcaatttgtgattattgt |
34355064 |
T |
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| Q |
113 |
caaggttattttaataattctagcaaatgatttgatatgtttaaagtcggtgat |
166 |
Q |
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| T |
34355063 |
caaggttattttaataattctagcaaatgatttgatatgtttaaagtcggtgat |
34355010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 109 - 166
Target Start/End: Original strand, 35054024 - 35054081
Alignment:
| Q |
109 |
ttgtcaaggttattttaataattctagcaaatgatttgatatgtttaaagtcggtgat |
166 |
Q |
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| T |
35054024 |
ttgtcaaggttattttaataattccagcaaatgatttgatatgtttaaagtcggtgat |
35054081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 59 - 107
Target Start/End: Original strand, 35053953 - 35054001
Alignment:
| Q |
59 |
agcagcaagtgtttcaattatcgtctcatttagctatcaatttgtgatt |
107 |
Q |
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| T |
35053953 |
agcatcaagtgtttcaattatcgtctcatctaactatcaattcgtgatt |
35054001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 83; Significance: 5e-39; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 346 - 441
Target Start/End: Original strand, 17463470 - 17463567
Alignment:
| Q |
346 |
tttatattttaagttgatgaacaattgtgtgaggtaaact--accaaaatatgtaaaataacattgcaatgaaactcaacaaaagtagaatgatcatc |
441 |
Q |
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| T |
17463470 |
tttatattttaagttgatgaacaactgtgtgaggtaaactttaccaaaatatgtaaaataacattgcaatgaaactcaacaaaagtagaatgatcatc |
17463567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 453 - 567
Target Start/End: Original strand, 17463616 - 17463730
Alignment:
| Q |
453 |
acatgtttatgcaacttgatcaaatcaacctcaatgcttctttgccatatgtcttcaccaacagatacattttgtacaagtccttcaggaccatctgagc |
552 |
Q |
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| T |
17463616 |
acatgttcatgcaacttgatcatatcaacctcaatgcgtctttgacatatgttttcaccaacagatactttttgtggaagtccttcaggaccatctgagc |
17463715 |
T |
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| Q |
553 |
tccacgctgccattt |
567 |
Q |
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| T |
17463716 |
tccatgctgccattt |
17463730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 224 - 305
Target Start/End: Original strand, 17462958 - 17463039
Alignment:
| Q |
224 |
tacatttactttttactctagtaataaactctattagaactcataatttatgtcacatatatgaagattagtctcacaattc |
305 |
Q |
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| T |
17462958 |
tacatttactttttactcaagtaattaactctattaaaactcataatttatgtcatatatatgaaaataagtctcacaattc |
17463039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 467 - 556
Target Start/End: Original strand, 17456364 - 17456456
Alignment:
| Q |
467 |
cttgatcaaatcaacctcaatgcttctttgccatatgtcttcaccaacagatacattttgtacaa---gtccttcaggaccatctgagctcca |
556 |
Q |
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| T |
17456364 |
cttgatcagatcaacctcaaggcttctttcccaaatgtcttcaccaacagatacattttgttcaaaagctccttcaggaccatctaagctcca |
17456456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 467 - 567
Target Start/End: Original strand, 17434239 - 17434342
Alignment:
| Q |
467 |
cttgatcaaatcaacctcaatgcttctttgccatatgtcttcaccaacagatacattttgtacaa---gtccttcaggaccatctgagctccacgctgcc |
563 |
Q |
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| T |
17434239 |
cttgatgaaatcaacttcaaggcttcttcgacaaatgtctgtaccaactgatacattttgcacaaaaggtccttcaggaccatctgaactccatgctgcc |
17434338 |
T |
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| Q |
564 |
attt |
567 |
Q |
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|||| |
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| T |
17434339 |
attt |
17434342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 517 - 567
Target Start/End: Complemental strand, 774780 - 774730
Alignment:
| Q |
517 |
atacattttgtacaagtccttcaggaccatctgagctccacgctgccattt |
567 |
Q |
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| T |
774780 |
atacattttgtacaagtccttcaggaccatctgagctccatgctgccattt |
774730 |
T |
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