View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8587_low_20 (Length: 240)
Name: NF8587_low_20
Description: NF8587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8587_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 10979109 - 10978905
Alignment:
| Q |
1 |
agaagatggggacttgcaaattcctaataagccttacttctgtctacaagatccaccagtagaggatgttgcagatgatgataatatcaactcatggagt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||| |||||| |||||||||||| |
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| T |
10979109 |
agaagatggggacttgcaaattcctaataagccttacttttgtttacaagatccaccagtagaggatgttggagatgattataatagaaactcatggagt |
10979010 |
T |
|
| Q |
101 |
tcgtatggtacatcagttagtgattccaagggaccaacctgatctctttttggttcttggctgaattgcatatcatattgttcgtacccaagcattaata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||| ||||||||||||| |
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| T |
10979009 |
tcgtatggtacatcagttagtgattccaagggaccaacctgatctctttttggttcttggttgaattacatatcatattgttggta-ccaagcattaata |
10978911 |
T |
|
| Q |
201 |
taagta |
206 |
Q |
| |
|
|||||| |
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|
| T |
10978910 |
taagta |
10978905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 10903214 - 10903000
Alignment:
| Q |
1 |
agaagatggggacttgcaaattcctaataagccttacttctgtctacaagatccaccagtagaggatgttgcagatgatgataatatcaactcatggagt |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||| || || |||| ||||||| |||||| ||||||||||| | |
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| T |
10903214 |
agaagatggggacttacaaattcctaataagccttacttttgtccacaagatccaccaacagcagacgttggagatgataataatagcaactcatggact |
10903115 |
T |
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| Q |
101 |
tcgtatggtacatcagttagtgattccaagggaccaacctgatctctttttggttcttggctgaattgcatatcatattgttcgta-cccaagcattaat |
199 |
Q |
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|| |||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
10903114 |
tcctatggtacatcaattagtgatcccaagggaccaacctaatctctttttggttcttggctgaattacatatcatattgttcgtaccccaagcattaat |
10903015 |
T |
|
| Q |
200 |
ataagtatgcaactt |
214 |
Q |
| |
|
||||||||||||||| |
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| T |
10903014 |
ataagtatgcaactt |
10903000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 10932754 - 10932550
Alignment:
| Q |
1 |
agaagatggggacttgcaaattcctaataagccttacttctgtctacaagatccaccagtagaggatgttgcagatgatgataatatcaactcatggagt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||| || || || ||||||||||| | |
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| T |
10932754 |
agaagatggggacttgcaaattcctaataagccttacttttgtccacaagatccaccagtagaggatgttggagataatagtagtagcaactcatggact |
10932655 |
T |
|
| Q |
101 |
tcgtatggtacatcagttagtgattccaagggaccaacctgatctctttttggttcttggctgaattgcatatcatattgttcgtacccaagcattaata |
200 |
Q |
| |
|
|| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||| | ||| | |||||||| ||| ||||||||||||| |
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|
| T |
10932654 |
tcctatggtacatcagttagtgatcccaagggaccaacctaatctctttttggttcttggttgaagtacatttaatattgttggta-ccaagcattaata |
10932556 |
T |
|
| Q |
201 |
taagta |
206 |
Q |
| |
|
|||||| |
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|
| T |
10932555 |
taagta |
10932550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 10914374 - 10914208
Alignment:
| Q |
1 |
agaagatggggacttgcaaattcctaataagccttacttctgtctacaagatccaccagtagaggatgttgcagatgatgataatatcaactcatggagt |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| || |||| ||||||||||||| || ||||||| ||||||| || || ||| ||||||| | |
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| T |
10914374 |
agaagatggagacttgcaaattcctaataagccttatttttgtccacaagatccaccaacagcagatgttggagatgataattgtagcaattcatggact |
10914275 |
T |
|
| Q |
101 |
tcgtatggtacatcagttagtgattccaagggaccaacctgatctctttttggttcttggctgaatt |
167 |
Q |
| |
|
|| |||||||||||||||||| || |||||||||||||||||||||||| |||||||||| |||||| |
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|
| T |
10914274 |
tcttatggtacatcagttagttatcccaagggaccaacctgatctctttctggttcttggttgaatt |
10914208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 11028934 - 11029135
Alignment:
| Q |
1 |
agaagatggggacttgcaaattcctaataagccttacttctgtctacaagatccaccagtagaggatgttgcagatgatgataatatcaactcatggagt |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||| || ||| ||| || ||||||||||| | |
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| T |
11028934 |
agaagatggagacttgcaaattcctaataagccttacttttgtccgcaagatccactagtagaggatgttggagtcgataatagtagcaactcatggact |
11029033 |
T |
|
| Q |
101 |
tcgtatggtacatcagttagtgattccaagggaccaacctgatctctttttggttcttggctgaattgcatatcatattgttcgtacccaagcattaata |
200 |
Q |
| |
|
|| ||||||||||||||||| ||| ||||| |||||| | | | |||| |||| || ||| |||||||||||||| ||| ||||||||||||| |
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|
| T |
11029034 |
tcctatggtacatcagttagcgatcccaagtgaccaatcagttagctttgtggt-------tgtattacatatcatattgttggta-ccaagcattaata |
11029125 |
T |
|
| Q |
201 |
taagtatgca |
210 |
Q |
| |
|
|||||||||| |
|
|
| T |
11029126 |
taagtatgca |
11029135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 11010675 - 11010504
Alignment:
| Q |
1 |
agaagatggggacttgcaaattcctaataagccttacttctgtctacaagatccaccagtagaggatgttgcagatgatgataatatcaactcatggagt |
100 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||||||| |||| ||||||| ||||| ||| ||||||| | | || ||||||||||| | |
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|
| T |
11010675 |
agaagatggagacttgcagattcctaataagccttacttttgtccacaagattcaccaatagcggatgttt---------acagtagcaactcatggact |
11010585 |
T |
|
| Q |
101 |
tcgtatggtacatcagttagtgattccaagggaccaacctgatctctttttggttcttggctgaattgcatatcatattgtt |
182 |
Q |
| |
|
|| |||||||||||||||||| |||||||||||||| |||||||| |||||||||| | |||||| |||||||||||||| |
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|
| T |
11010584 |
tccgatggtacatcagttagtggttccaagggaccaaactgatctc-ttttggttctcgtttgaattacatatcatattgtt |
11010504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 10994031 - 10994109
Alignment:
| Q |
1 |
agaagatggggacttgcaaattcctaataagccttacttctgtctacaagatccaccagtagaggatgttgcagatgat |
79 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||| | | || ||||||| ||||| ||| |||||| ||||||| |
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|
| T |
10994031 |
agaagatggggatttgcaaatgcctaataagccttacctttatccacaagatataccagcagacgatgttagagatgat |
10994109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 11005347 - 11005405
Alignment:
| Q |
1 |
agaagatggggacttgcaaattcctaataagccttacttctgtctacaagatccaccag |
59 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||| | | || |||||||| ||||| |
|
|
| T |
11005347 |
agaagatggggatttgcaaatgcctaataagccttacctttatccacaagatctaccag |
11005405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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