View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8587_low_3 (Length: 519)
Name: NF8587_low_3
Description: NF8587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8587_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-175; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 1 - 495
Target Start/End: Original strand, 8775824 - 8776316
Alignment:
| Q |
1 |
tggtaaagaggaaagtgagcaattaacaatctttattttgtgcaagatttcaccaacnnnnnnnccattaaatcatatattatttagagttcgacacaaa |
100 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||| |||||||| ||||||| | |||| |||||||||||||||||| || ||| |
|
|
| T |
8775824 |
tggtaaagagaaaagttagcaattaacaatctttattttgggcaagattgcaccaacaagaaaaaccataaa--atatattatttagagttcaacttaaa |
8775921 |
T |
|
| Q |
101 |
actaaaccggcttaaactacacaaagttctttcggtt-tacccaaccaagggaatagagcaccaccattgaggcggttgaagtccattaagtaatcttct |
199 |
Q |
| |
|
|||||| | || |||||| ||| | ||||| |||| |||| ||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8775922 |
actaaatcaactcaaactaagcaa-gctctttgggttataccaaactaagggaatatagcaacaccattgaggcggttgaagtccattaagtaatcttct |
8776020 |
T |
|
| Q |
200 |
gaccaagttgttatatttggtatcaaaatgtcatcattatcatcaaagcttccaatgaatccagtttcaaaataagggaggtttgagtcaccaacaacac |
299 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
8776021 |
gaccaagttgttatgtttggtatcaaaatgtcatcattatcatcaaagcttccaatgaatccagtttcagaataagggaggtttgagtcaccgacaacac |
8776120 |
T |
|
| Q |
300 |
ctataacattgcttctttgtggctcctcaaattgcagaatcattttgttatgtgaacccaagtttctaacatttgaggatgatccaacatcttcaacaac |
399 |
Q |
| |
|
|| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8776121 |
ctgtaacattgctgctttgtggctcctcaaattgcagaatcattttgttatgtgaacccaagtttctaacatttgaggatgatccaacatcttcaacaac |
8776220 |
T |
|
| Q |
400 |
gggtgattgactctctattagtttcacttccggataaggtatttttgattgatcagcgagaacctgggcattgctgccctccggaggatcaatatg |
495 |
Q |
| |
|
| ||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
8776221 |
gagtgattgactctctaatagttccacttccggataaggggtttttgattgatcagcgagaacctgggcattgctgctctccggatgatcaatatg |
8776316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 492
Target Start/End: Complemental strand, 8787782 - 8787293
Alignment:
| Q |
1 |
tggtaaagaggaaagtgagcaattaacaatctttattttgtgcaagatttcaccaacnnnnnnnccattaaatcatatattatttagagttcgacacaaa |
100 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||| |||||||| || |||| | |||| |||||||||||||||||| || |||| |
|
|
| T |
8787782 |
tggtaaagagaaaagttagcaattaacaatctttattttgggcaagattgcagcaacaagaaaaaccataaa--atatattatttagagttcaactcaaa |
8787685 |
T |
|
| Q |
101 |
actaaaccggcttaaactacacaaagttctttcggtt-tacccaaccaagggaatagagcaccaccattgaggcggttgaagtccattaagtaatcttct |
199 |
Q |
| |
|
|||||| | || |||||| ||| | ||||| |||| |||| ||| ||||||||| |||| |||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
8787684 |
actaaatcaactcaaactaagcaa-gctctttgggttataccaaactaagggaatatagcaacaccattgaggcggttgaagtccattaaataatcttct |
8787586 |
T |
|
| Q |
200 |
gaccaagttgttatatttggtatcaaaatgtcatcattatcatcaaagcttccaatgaatccagtttcaaaataagggaggtttgagtcaccaacaacac |
299 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
8787585 |
gaccaagctgttatgtttggtatcaaaatgtcatcatcatcatcaaagcttccaatgaatccagtttcagaataagggaggtttgagtcaccaacaacac |
8787486 |
T |
|
| Q |
300 |
ctataacattgcttctttgtggctcctcaaattgcagaatcattttgttatgtgaacccaagtttctaacatttgaggatgatccaacatcttcaacaac |
399 |
Q |
| |
|
| |||||||||| ||||||||||| ||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
8787485 |
ccgtaacattgctactttgtggctcatcaaattcaataatcattttgttgtgtgaacccaagtttctaacatttgaggatgatccaacttcttcaacaac |
8787386 |
T |
|
| Q |
400 |
gggtgattgactctctattagtttcacttccggataaggtatttttgattgatcagcgagaacctgggcattgctgccctccggaggatcaat |
492 |
Q |
| |
|
||| |||||||||||| ||||| || ||| |||||| | |||||||||||||||||||||||||| |||||||||| ||||||| ||||||| |
|
|
| T |
8787385 |
aggtaattgactctctaatagttccatttcgggataaaggatttttgattgatcagcgagaacctgagcattgctgctctccggatgatcaat |
8787293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 8773479 - 8773624
Alignment:
| Q |
1 |
tggtaaagaggaaagtgagcaattaacaatctttattttgtgcaagatttcaccaacnnnnnnnc-cattaaatcatatattatttagagttcgacacaa |
99 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
8773479 |
tggtaaagaggaaaatgagcaattaacaatcttcattttgtgcaagatttcaccaacaagaaaaatcattaaatcgtatattatttagagttcgacacaa |
8773578 |
T |
|
| Q |
100 |
aactaaaccggcttaaactacacaaagttctttcggtttacccaac |
145 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
8773579 |
aactaaaccggcttaaactacgcaaagtactttcggtttacccaac |
8773624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 147 - 241
Target Start/End: Complemental strand, 29620875 - 29620781
Alignment:
| Q |
147 |
aagggaatagagcaccaccattgaggcggttgaagtccattaagtaatcttctgaccaagttgttatatttggtatcaaaatgtcatcattatca |
241 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||| ||| ||| ||| || || ||| || ||||||||||||||| |||||| |||| |
|
|
| T |
29620875 |
aagggaatagagcaccactattgatctggttgaagtccatcaagagatcctctaacataggtgtcatgtttggtatcaaaatgacatcatcatca |
29620781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University