View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8587_low_4 (Length: 489)
Name: NF8587_low_4
Description: NF8587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8587_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 18 - 474
Target Start/End: Complemental strand, 10388256 - 10387800
Alignment:
| Q |
18 |
agtggcgccccgtggcaacaccgagcctcgccgataaaagttgtatgaggagccccattatggtggaccacattaaaagccaaagcaacgagtaccctgc |
117 |
Q |
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| T |
10388256 |
agtggcgccccgtggcaacaccaagcctcgccgataaaagttgtatgaggagccccattatggtggaccacattaaaagccaaagcaacgagtaccctgc |
10388157 |
T |
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| Q |
118 |
aatcgcaccggcttgcaagtctccttctatgtttcctggatccaaaaatgccacactcattagaagccctggccccgtgaagagccagagcttcttccat |
217 |
Q |
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| T |
10388156 |
aatcgcaccggcttgcaagtctccttctatgtttcctggatccaaaaatgccacactcattagaagccctggccccgtgaagagccagagcttcttccat |
10388057 |
T |
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| Q |
218 |
gaaaatggtggtacaatcgttgacccggtggtgttgccatttgactctaagtcaaaaatatgaaccttgtccttcgccgcatacacatagtcctctttgt |
317 |
Q |
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| T |
10388056 |
gaaaatggtggtacaatcgttgacccggtggtgttgccatttgactctaagtcaaaaatatgaaccttgtccttcgccgcatacacatagtcctctttgt |
10387957 |
T |
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| Q |
318 |
tttcatcgtccaacgatgttgacaaagaggacgacggtgtggacaatggtatattctcgcattcttcggattgtagcagccggttttgttctccttctaa |
417 |
Q |
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| T |
10387956 |
ttccatcgtccaaagatgttgacaaagaggacgacggtgttgacaatggtatattctcgcattcttcggattgtagcagccggttttgttctccttctaa |
10387857 |
T |
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| Q |
418 |
ttcaacgaaatcttttttatgatgttgttgtgattgagtgtccatgtttcatgtgat |
474 |
Q |
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| T |
10387856 |
ttcaacgaaatcttttttatgatgttgttgtgattgagtgtccatgtttcatgtgat |
10387800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 80 - 228
Target Start/End: Complemental strand, 39672383 - 39672235
Alignment:
| Q |
80 |
gtggaccacattaaaagccaaagcaacgagtaccctgcaatcgcaccggcttgcaagtctccttctatgtttcctggatccaaaaatgccacactcatta |
179 |
Q |
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|||| |||||| | |||||| | ||| || ||||| ||||| ||||| ||||| | ||||||||||| ||| |||||||||||||| || | |||||||| |
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| T |
39672383 |
gtggcccacataagaagccataacaaagaatacccagcaatggcaccagcttgtaggtctccttctaagttccctggatccaaaaacgctatactcatta |
39672284 |
T |
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| Q |
180 |
gaagccctggccccgtgaagagccagagcttcttccatgaaaatggtgg |
228 |
Q |
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| T |
39672283 |
gaaaaccaggtccagtgaatagccatagcttcttccatgaaaatggtgg |
39672235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 137 - 228
Target Start/End: Original strand, 5805525 - 5805616
Alignment:
| Q |
137 |
tctccttctatgtttcctggatccaaaaatgccacactcattagaagccctggccccgtgaagagccagagcttcttccatgaaaatggtgg |
228 |
Q |
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|||||||| | |||||| |||||||||||||| | ||||||||||| ||||| || |||| | |||||| |||||||||||||| ||||| |
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| T |
5805525 |
tctccttccaagtttccaggatccaaaaatgctatactcattagaaaacctggtccactgaataaccagagtttcttccatgaaaacggtgg |
5805616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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