View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8587_low_5 (Length: 473)

Name: NF8587_low_5
Description: NF8587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8587_low_5
NF8587_low_5
[»] chr8 (5 HSPs)
chr8 (1-473)||(22512380-22512852)
chr8 (66-173)||(2688803-2688909)
chr8 (4-45)||(22922185-22922226)
chr8 (8-115)||(23573220-23573334)
chr8 (4-54)||(26377776-26377826)
[»] chr3 (10 HSPs)
chr3 (324-446)||(35707913-35708035)
chr3 (189-300)||(35724382-35724493)
chr3 (324-446)||(35723873-35723995)
chr3 (4-173)||(8536666-8536839)
chr3 (189-300)||(35726234-35726345)
chr3 (1-123)||(365883-366008)
chr3 (189-300)||(35708479-35708590)
chr3 (1-45)||(3064071-3064115)
chr3 (104-150)||(43304322-43304368)
chr3 (12-56)||(2473000-2473044)
[»] chr4 (7 HSPs)
chr4 (1-129)||(22716287-22716419)
chr4 (1-129)||(22988798-22988930)
chr4 (4-173)||(10494553-10494726)
chr4 (2-56)||(9260315-9260369)
chr4 (101-150)||(6659756-6659805)
chr4 (4-69)||(7635027-7635092)
chr4 (4-45)||(13085429-13085470)
[»] chr5 (3 HSPs)
chr5 (1-151)||(18252071-18252225)
chr5 (2-91)||(21845223-21845316)
chr5 (4-45)||(19677630-19677671)
[»] chr2 (8 HSPs)
chr2 (4-173)||(280297-280469)
chr2 (8-170)||(32162254-32162419)
chr2 (4-129)||(33053094-33053222)
chr2 (4-65)||(27952660-27952721)
chr2 (4-45)||(2165637-2165678)
chr2 (1-95)||(35681913-35682011)
chr2 (1-45)||(22011145-22011189)
chr2 (4-114)||(31635975-31636089)
[»] chr1 (7 HSPs)
chr1 (1-173)||(13441921-13442095)
chr1 (4-173)||(40805488-40805661)
chr1 (68-150)||(8220155-8220236)
chr1 (4-69)||(10926933-10926998)
chr1 (11-173)||(31915167-31915332)
chr1 (4-56)||(8966035-8966087)
chr1 (7-115)||(10927792-10927903)
[»] scaffold0054 (3 HSPs)
scaffold0054 (4-164)||(48954-49116)
scaffold0054 (4-104)||(10349-10453)
scaffold0054 (4-122)||(37396-37517)
[»] chr7 (9 HSPs)
chr7 (4-131)||(11001109-11001240)
chr7 (2-129)||(1369488-1369620)
chr7 (1-172)||(1217492-1217665)
chr7 (4-69)||(4303146-4303211)
chr7 (4-127)||(8915456-8915582)
chr7 (1-122)||(13883015-13883141)
chr7 (8-56)||(1786426-1786474)
chr7 (109-173)||(11001256-11001320)
chr7 (262-300)||(3365578-3365616)
[»] scaffold0024 (2 HSPs)
scaffold0024 (84-173)||(144274-144363)
scaffold0024 (102-170)||(145364-145432)
[»] chr6 (15 HSPs)
chr6 (8-148)||(34374074-34374218)
chr6 (4-114)||(22873500-22873614)
chr6 (4-130)||(18203109-18203238)
chr6 (4-123)||(12778692-12778813)
chr6 (4-112)||(12881715-12881826)
chr6 (4-104)||(22888953-22889057)
chr6 (4-104)||(22910496-22910600)
chr6 (4-45)||(3541960-3542001)
chr6 (4-45)||(30049630-30049671)
chr6 (4-45)||(30051917-30051958)
chr6 (8-59)||(32361106-32361157)
chr6 (97-173)||(8047760-8047836)
chr6 (2-45)||(8047661-8047704)
chr6 (262-300)||(16721733-16721771)
chr6 (7-56)||(18720020-18720069)
[»] scaffold0110 (1 HSPs)
scaffold0110 (4-45)||(45951-45992)
[»] scaffold0240 (1 HSPs)
scaffold0240 (66-131)||(15676-15741)


Alignment Details
Target: chr8 (Bit Score: 453; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 1 - 473
Target Start/End: Original strand, 22512380 - 22512852
Alignment:
Q  1 ctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcccatgttgactcatccaacgaacaagagaccgccct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  22512380 ctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattctgataagaagcttcccatgttgactcatccaacgaacataagaccgccct 22512479  T
Q  101 cctggatcccattgagtgaaatgcaaagatgacttggtttgaaaaatatagtaattgcctttatgccattgaattgatttaccaggatcccattgtttaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22512480 cctggatcccattgagtgaaatgcaaagatgacttggtttgaaaaatatagtaattgcctttatgccattgaattgatttaccaggatcccattgtttaa 22512579  T
Q  201 ttgcatcccatatttgaagaccatcattgacaagaggatagtcttcaattattaacttcactccatgttgtgcattaggatcttccacaaccattcctct 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22512580 ttgcatcccatatttgaagaccatcattgacaagaggatagtcttcaattattaacttcactccatgttgtgcattaggatcttccacaaccattcctct 22512679  T
Q  301 gttgataagatcatttctaagtgctttattgatctccatggtatacctcagatgtggatgcaataatctaaaaattagatgcatggaactgagttgtcta 400  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22512680 attgataagatcatttctaagtgctttattgatctccatggtatacctcagatgtggatgcaataatctaaaaattagatgcatggaactgagttgtcta 22512779  T
Q  401 tgcgtggcaattataataggttcgacaacacaatgagtttttagccaataggaggaatcagaatcaggtgtga 473  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22512780 tgcatggcaattataataggttcgacaacacaatgagtttttagccaataggaggaatcagaatcaggtgtga 22512852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 66 - 173
Target Start/End: Complemental strand, 2688909 - 2688803
Alignment:
Q  66 catgttgactcatccaacgaacaagagaccgccctcctggatcccattgagtgaaatgcaaagatgacttggtttgaaaaatatagtaattgcctttatg 165  Q
    ||||||||||| ||||| ||||| |||| | ||||| |||||||||||| |||||||| |||||||  || ||| | ||||||||||| ||||||||||     
T  2688909 catgttgactcctccaatgaacatgagatcaccctcatggatcccattgggtgaaatgaaaagatggtttagttcg-aaaatatagtagttgcctttatc 2688811  T
Q  166 ccattgaa 173  Q
    ||||||||    
T  2688810 ccattgaa 2688803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 4 - 45
Target Start/End: Original strand, 22922185 - 22922226
Alignment:
Q  4 catcagtctcctccacctctaaagaactcgaccccgagttct 45  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  22922185 catcagtctcctccacctctgaagaactcgaccccgagttct 22922226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 115
Target Start/End: Complemental strand, 23573334 - 23573220
Alignment:
Q  8 agtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcc----catgttgactcatccaacgaacaagag---accgccct 100  Q
    |||||||||||||||| ||||||||||||| ||||| | ||| ||||||  |||||||    ||||||||||| ||||| |||||| ||   ||| ||||    
T  23573334 agtctcctccacctctgaagaactcgacccggagttttcattttgataaagagcttcccatgcatgttgactcctccaatgaacaaaagaccaccaccct 23573235  T
Q  101 cctggatcccattga 115  Q
    ||||| |||||||||    
T  23573234 cctggttcccattga 23573220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 26377826 - 26377776
Alignment:
Q  4 catcagtctcctccacctctaaagaactcgaccccgagttcttattatgat 54  Q
    |||||||||||||||||| | |||||||||||||| |||||| ||| ||||    
T  26377826 catcagtctcctccacctttgaagaactcgaccccaagttctcattctgat 26377776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 3e-46; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 324 - 446
Target Start/End: Complemental strand, 35708035 - 35707913
Alignment:
Q  324 ctttattgatctccatggtatacctcagatgtggatgcaataatctaaaaattagatgcatggaactgagttgtctatgcgtggcaattataataggttc 423  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| || || |||||||||||||||||    
T  35708035 ctttattgatttccatggtatatctcagatgtggatgcaataatctaaaaattggatgcatggaactgagttgtctgtgtgttgcaattataataggttc 35707936  T
Q  424 gacaacacaatgagtttttagcc 446  Q
    |||||||||||||||| ||||||    
T  35707935 gacaacacaatgagttcttagcc 35707913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 189 - 300
Target Start/End: Complemental strand, 35724493 - 35724382
Alignment:
Q  189 cccattgtttaattgcatcccatatttgaagaccatcattgacaagaggatagtcttcaattattaacttcactccatgttgtgcattaggatcttccac 288  Q
    |||||||||||||||||||||||||| |||||||||||||| ||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  35724493 cccattgtttaattgcatcccatattagaagaccatcattggcaaaagggtagtcttcaattattagcttcactccatgttgtgcattaggatcttccac 35724394  T
Q  289 aaccattcctct 300  Q
    | ||||||||||    
T  35724393 agccattcctct 35724382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 324 - 446
Target Start/End: Complemental strand, 35723995 - 35723873
Alignment:
Q  324 ctttattgatctccatggtatacctcagatgtggatgcaataatctaaaaattagatgcatggaactgagttgtctatgcgtggcaattataataggttc 423  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||||| ||| |||| ||||||||||||||||| || || |||||||||||||||||    
T  35723995 ctttattgatttccatggtatatctcagatgtggatgcaataatctaaatattggatgtatggaactgagttgtctgtgtgttgcaattataataggttc 35723896  T
Q  424 gacaacacaatgagtttttagcc 446  Q
    |||||||||||||||| ||||||    
T  35723895 gacaacacaatgagttcttagcc 35723873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 4 - 173
Target Start/End: Original strand, 8536666 - 8536839
Alignment:
Q  4 catcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcccat----gttgactcatccaacgaacaagagaccgccc 99  Q
    |||||| ||| ||||||||||||||||||||| ||||||||||||| |||||| ||| ||| |||    |||||||| ||||| |||||||||| | |||    
T  8536666 catcagcctcttccacctctaaagaactcgactccgagttcttattctgataaaaagtttctcatatatgttgactcttccaatgaacaagagatcaccc 8536765  T
Q  100 tcctggatcccattgagtgaaatgcaaagatgacttggtttgaaaaatatagtaattgcctttatgccattgaa 173  Q
    |||||||||||||||||| |||||||||||||  || |||| |||| ||||| | |||||||||||||||||||    
T  8536766 tcctggatcccattgagtaaaatgcaaagatggtttcgtttaaaaactatagcagttgcctttatgccattgaa 8536839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 189 - 300
Target Start/End: Original strand, 35726234 - 35726345
Alignment:
Q  189 cccattgtttaattgcatcccatatttgaagaccatcattgacaagaggatagtcttcaattattaacttcactccatgttgtgcattaggatcttccac 288  Q
    |||||||||| ||||||||||||||  |||||||||||||| ||| ||| ||||||||||||  || ||| | ||||||||||||| |||||||||||||    
T  35726234 cccattgtttgattgcatcccatatgagaagaccatcattggcaaaagggtagtcttcaattgctagctttagtccatgttgtgcactaggatcttccac 35726333  T
Q  289 aaccattcctct 300  Q
    | ||||||||||    
T  35726334 agccattcctct 35726345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 365883 - 366008
Alignment:
Q  1 ctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttccc---atgttgactcatccaacgaacaagagaccgc 97  Q
    |||||||| |||||||||||||| |||||||||||| ||||||||  || ||||||  |||||||    |||||||||| ||||| ||||| |||||| |    
T  365883 ctgcatcaatctcctccacctctgaagaactcgacctcgagttctcgttttgataaagagcttccatgtatgttgactcttccaatgaacaggagaccac 365982  T
Q  98 cctcctggatcccattgagtgaaatg 123  Q
    ||||| ||||||||||||||||||||    
T  365983 cctccgggatcccattgagtgaaatg 366008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 189 - 300
Target Start/End: Complemental strand, 35708590 - 35708479
Alignment:
Q  189 cccattgtttaattgcatcccatatttgaagaccatcattgacaagaggatagtcttcaattattaacttcactccatgttgtgcattaggatcttccac 288  Q
    |||||||||| ||||||||||||||| |||||||||||||| ||| ||| ||||||||||||  || ||| | ||||||||||||| || |||||| |||    
T  35708590 cccattgtttgattgcatcccatattagaagaccatcattggcaaaagggtagtcttcaattgctagctttagtccatgttgtgcactatgatctttcac 35708491  T
Q  289 aaccattcctct 300  Q
    | ||||||||||    
T  35708490 agccattcctct 35708479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 3064071 - 3064115
Alignment:
Q  1 ctgcatcagtctcctccacctctaaagaactcgaccccgagttct 45  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  3064071 ctgcatcagtctcctccacctctgaagaactcgaccccgagttct 3064115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 150
Target Start/End: Original strand, 43304322 - 43304368
Alignment:
Q  104 ggatcccattgagtgaaatgcaaagatgacttggtttgaaaaatata 150  Q
    ||||||||||||||||||||| |||||   |||||||||||||||||    
T  43304322 ggatcccattgagtgaaatgccaagattgtttggtttgaaaaatata 43304368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 2473000 - 2473044
Alignment:
Q  12 tcctccacctctaaagaactcgaccccgagttcttattatgataa 56  Q
    |||||||| | ||||||||||||||||||||||| ||| ||||||    
T  2473000 tcctccacttttaaagaactcgaccccgagttctcattctgataa 2473044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 6e-35; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 22716419 - 22716287
Alignment:
Q  1 ctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcc----catgttgactcatccaacgaacaagagaccg 96  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||  |||||||    ||||||||||| ||||| ||||||||||||     
T  22716419 ctgcatcagtctcctccagctctaaagaactcgaccccgagttctcattttgataaagagcttcccattcatgttgactcctccaatgaacaagagacca 22716320  T
Q  97 ccctcctggatcccattgagtgaaatgcaaaga 129  Q
    |||||||| ||| ||||||||||||||||||||    
T  22716319 ccctcctgaatcacattgagtgaaatgcaaaga 22716287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 22988798 - 22988930
Alignment:
Q  1 ctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcc----catgttgactcatccaacgaacaagagaccg 96  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||  |||||||    ||||||||||| ||||| ||||||||||||     
T  22988798 ctgcatcagtctcctccagctctaaagaactcgaccccgagttctcattttgataaagagcttcccattcatgttgactcctccaatgaacaagagacca 22988897  T
Q  97 ccctcctggatcccattgagtgaaatgcaaaga 129  Q
    |||||||| ||| ||||||||||||||||||||    
T  22988898 ccctcctgaatcacattgagtgaaatgcaaaga 22988930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 4 - 173
Target Start/End: Complemental strand, 10494726 - 10494553
Alignment:
Q  4 catcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcccatg----ttgactcatccaacgaacaagagaccgccc 99  Q
    ||||||||| ||| || ||| |||||||||||| | |||||| ||  ||||||  |||||||||||    | ||||| ||||| |||||||||||| |||    
T  10494726 catcagtcttctctacttctgaagaactcgacctcaagttctgatcctgataaatagcttcccatgcatgtcgactcctccaatgaacaagagaccaccc 10494627  T
Q  100 tcctggatcccattgagtgaaatgcaaagatgacttggtttgaaaaatatagtaattgcctttatgccattgaa 173  Q
    |  || || ||| ||||||||||||||||||   ||||||| |||||||||| | ||||| |||| ||||||||    
T  10494626 ttttgaattccactgagtgaaatgcaaagatagtttggtttaaaaaatatagcagttgcccttatcccattgaa 10494553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 9260369 - 9260315
Alignment:
Q  2 tgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataa 56  Q
    ||||||| ||||||| || ||||||||||||||||||||||||||||| ||||||    
T  9260369 tgcatcaatctcctctacgtctaaagaactcgaccccgagttcttattttgataa 9260315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 101 - 150
Target Start/End: Original strand, 6659756 - 6659805
Alignment:
Q  101 cctggatcccattgagtgaaatgcaaagatgacttggtttgaaaaatata 150  Q
    |||||||||||||||||||||||| |||||   |||||||||||||||||    
T  6659756 cctggatcccattgagtgaaatgccaagattgtttggtttgaaaaatata 6659805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 69
Target Start/End: Complemental strand, 7635092 - 7635027
Alignment:
Q  4 catcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcccatg 69  Q
    ||||||||||||||| |||| |||||||||||||| | |||| ||| | |||| ||||| ||||||    
T  7635092 catcagtctcctccatctctgaagaactcgaccccaaattctcattctaataaaaagctccccatg 7635027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 45
Target Start/End: Original strand, 13085429 - 13085470
Alignment:
Q  4 catcagtctcctccacctctaaagaactcgaccccgagttct 45  Q
    |||||||||| |||| |||| |||||||||||||||||||||    
T  13085429 catcagtctcttccatctctgaagaactcgaccccgagttct 13085470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 18252225 - 18252071
Alignment:
Q  1 ctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcc----catgttgactcatccaacgaacaagagaccg 96  Q
    ||||||||| |||||| |||||| ||||||| ||||||||||||| ||||||||||  ||||| |    ||||| ||||| ||||| | ||||||||||     
T  18252225 ctgcatcagcctcctctacctctgaagaacttgaccccgagttctcattatgataaacagctttccatgcatgtggactcctccaatggacaagagacca 18252126  T
Q  97 ccctcctggatcccattgagtgaaatgcaaagatgacttggtttgaaaaatatag 151  Q
    |||||||| |||||||| |||||||||||||||||  ||||||||||||||||||    
T  18252125 ccctcctgaatcccatttagtgaaatgcaaagatggtttggtttgaaaaatatag 18252071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 2 - 91
Target Start/End: Original strand, 21845223 - 21845316
Alignment:
Q  2 tgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcc----catgttgactcatccaacgaacaaga 91  Q
    |||||||||||  ||||||||| ||||||||||||||||||||| ||| ||||||  |||||||    ||||||||||| ||||| ||||||||    
T  21845223 tgcatcagtctgttccacctctgaagaactcgaccccgagttctcattctgataaagagcttcccatgcatgttgactcctccaatgaacaaga 21845316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 4 - 45
Target Start/End: Original strand, 19677630 - 19677671
Alignment:
Q  4 catcagtctcctccacctctaaagaactcgaccccgagttct 45  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  19677630 catcagtctcctccacctctgaagaactcgaccccgagttct 19677671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 9e-31; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 4 - 173
Target Start/End: Original strand, 280297 - 280469
Alignment:
Q  4 catcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttc----ccatgttgactcatccaacgaacaagagaccgccc 99  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||| ||||||  ||||||     |||||||| || ||||| |||| |||||||  ||    
T  280297 catcagtctcctccacctctgaagaactcgaccccgagttctcattctgataaagagcttcacatgcatgttgaatcctccaatgaac-agagaccatcc 280395  T
Q  100 tcctggatcccattgagtgaaatgcaaagatgacttggtttgaaaaatatagtaattgcctttatgccattgaa 173  Q
    | |||||||||||||||||||||||| |||||  ||| |||| ||||||||| | |||| ||||||||||||||    
T  280396 ttctggatcccattgagtgaaatgcatagatggtttgatttggaaaatatagcagttgcttttatgccattgaa 280469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 8 - 170
Target Start/End: Original strand, 32162254 - 32162419
Alignment:
Q  8 agtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcccatg----ttgactcatccaacgaacaagagaccgccctcct 103  Q
    ||||||||||| |||| || ||||| |||  ||||||| ||| ||||||  |||||||||||    ||||||| || || |||||||||||| |||||||    
T  32162254 agtctcctccatctctgaaaaactcaaccttgagttctcattctgataaagagcttcccatgcatgttgactc-tctaatgaacaagagaccaccctcct 32162352  T
Q  104 ggatcccattgagtgaaatgcaaagatgacttggtttgaaaaatatagtaattgcctttatgccatt 170  Q
     |||||||||||||||||||  ||||||  ||| |||| ||||||||||| ||||||||||||||||    
T  32162353 tgatcccattgagtgaaatgagaagatggtttgctttggaaaatatagtagttgcctttatgccatt 32162419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 4 - 129
Target Start/End: Complemental strand, 33053222 - 33053094
Alignment:
Q  4 catcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttc----ccatgttgactcatccaacgaacaagagaccgccc 99  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||| | ||||  ||||||     ||||| ||||| || ||  ||||||||||| |||    
T  33053222 catcagtctcctccacctctgaagaactcgaccccg-gttcttattctaataaagagcttctcattcatgtcgactcctctaataaacaagagaccaccc 33053124  T
Q  100 tcctggatcccattgagtgaaatgcaaaga 129  Q
    ||||| ||||||||||||| ||||||||||    
T  33053123 tcctgaatcccattgagtggaatgcaaaga 33053094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 27952660 - 27952721
Alignment:
Q  4 catcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcc 65  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||| ||||||  |||||||    
T  27952660 catcagtctcctccacctctgaagaactcgaccccgagttctcattctgataaagagcttcc 27952721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 2165678 - 2165637
Alignment:
Q  4 catcagtctcctccacctctaaagaactcgaccccgagttct 45  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  2165678 catcagtctcctccacctctgaagaactcgaccccgagttct 2165637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 35682011 - 35681913
Alignment:
Q  1 ctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcc----catgttgactcatccaacgaacaagagacc 95  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||  || ||||||  ||||| |    ||||||||||| | ||| ||||||||||||    
T  35682011 ctgcatcagtctcctccacctctgaagaactcgaccccaagttctctttctgataaagagctttctatgcatgttgactccttcaatgaacaagagacc 35681913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 22011189 - 22011145
Alignment:
Q  1 ctgcatcagtctcctccacctctaaagaactcgaccccgagttct 45  Q
    |||||||| |||||||||||||||||||||||||||| |||||||    
T  22011189 ctgcatcactctcctccacctctaaagaactcgaccctgagttct 22011145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 4 - 114
Target Start/End: Complemental strand, 31636089 - 31635975
Alignment:
Q  4 catcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcc----catgttgactcatccaacgaacaagagaccgccc 99  Q
    |||||||||||||||||||| ||||||||||  ||||||||| |||  |||||  || ||||    ||||||||||| ||||| |||||||||  | |||    
T  31636089 catcagtctcctccacctctgaagaactcgaatccgagttctcatttagataaagagtttcccatgcatgttgactcctccaatgaacaagagcacaccc 31635990  T
Q  100 tcctggatcccattg 114  Q
     || |||||||||||    
T  31635989 acccggatcccattg 31635975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 13441921 - 13442095
Alignment:
Q  1 ctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcc----catgttgactcatccaacgaacaagagaccg 96  Q
    ||||||||||||||||||||||| ||||| ||||   | |||||| ||| ||||||  |||||||    ||||||||||| ||||| || ||||||| |     
T  13441921 ctgcatcagtctcctccacctctgaagaattcga--tcaagttctcattctgataaagagcttcccatgcatgttgactcctccaatgagcaagagatca 13442018  T
Q  97 ccctcctggatcccattgagtgaaatgcaaagatgacttggtttgaaaaatatagtaattgcctttatgccattgaa 173  Q
     |||||||||||||||||||||||||||||||||   ||||||||||||||| |  | || ||||||| ||||||||    
T  13442019 tcctcctggatcccattgagtgaaatgcaaagatagtttggtttgaaaaataaaacagtttcctttataccattgaa 13442095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 4 - 173
Target Start/End: Complemental strand, 40805661 - 40805488
Alignment:
Q  4 catcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttc----ccatgttgactcatccaacgaacaagagaccgccc 99  Q
    |||||||||||||||||| ||||||| |||||||||||||||| || ||||||| || |||     |||| |||||| ||| | ||||||| || | |||    
T  40805661 catcagtctcctccacctttaaagaagtcgaccccgagttcttgttctgataaggagtttcacatgcatgatgactcctccgatgaacaagggatcaccc 40805562  T
Q  100 tcctggatcccattgagtgaaatgcaaagatgacttggtttgaaaaatatagtaattgcctttatgccattgaa 173  Q
    ||||| ||| |||||| |||||||||||||||| ||| |||| | ||||||| | ||| |||||| ||||||||    
T  40805561 tcctgaatctcattgaatgaaatgcaaagatgatttgatttggagaatatagcagttgtctttatcccattgaa 40805488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 68 - 150
Target Start/End: Complemental strand, 8220236 - 8220155
Alignment:
Q  68 tgttgactcatccaacgaacaagagaccgccctcctggatcccattgagtgaaatgcaaagatgacttggtttgaaaaatata 150  Q
    ||||||||| ||||  |||||||||||  ||||||||||||||||||||||||||||| ||||| | ||||||||| ||||||    
T  8220236 tgttgactcctccagtgaacaagagacgaccctcctggatcccattgagtgaaatgcatagatggc-tggtttgaataatata 8220155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 69
Target Start/End: Complemental strand, 10926998 - 10926933
Alignment:
Q  4 catcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcccatg 69  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||| ||||||  | |||||||||    
T  10926998 catcagtctcctccacctctgaagaactcgaccccgagttctcattctgataaagaacttcccatg 10926933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 11 - 173
Target Start/End: Complemental strand, 31915332 - 31915167
Alignment:
Q  11 ctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcc---cat-gttgactcatccaacgaacaagagaccgccctcctgga 106  Q
    ||||||||||||| |||||||| ||||||||||||  || | ||||||   ||||   ||| |||||||| ||||| |||||||||||  || |||||||    
T  31915332 ctcctccacctctgaagaactcaaccccgagttctcgttctaataagagttttccattcattgttgactcctccaatgaacaagagactacc-tcctgga 31915234  T
Q  107 tcccattgagtgaaatgcaaagatgacttggtttgaaaaatatagtaattgcctttatgccattgaa 173  Q
    ||| ||||||||||||  |||||||  |||||||| ||||||| |   |||||||||| ||||||||    
T  31915233 tccgattgagtgaaatctaaagatggtttggtttgtaaaatattgatgttgcctttatcccattgaa 31915167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 8966035 - 8966087
Alignment:
Q  4 catcagtctcctccacctctaaagaactcgaccccgagttcttattatgataa 56  Q
    |||||||||||||||||||| ||||||||||||| ||||||| ||| ||||||    
T  8966035 catcagtctcctccacctctgaagaactcgaccctgagttctcattctgataa 8966087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 115
Target Start/End: Complemental strand, 10927903 - 10927792
Alignment:
Q  7 cagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcccat----gttgactcatccaacgaacaagagaccgccctcc 102  Q
    ||||||||||||| ||| ||||||||||||||||||||| ||| | ||||  || ||| |||    |||||||| | |||  ||||||||||| ||||||    
T  10927903 cagtctcctccacttctgaagaactcgaccccgagttctcattctaataaagagtttctcatgcaagttgactcttacaataaacaagagacc-ccctcc 10927805  T
Q  103 tggatcccattga 115  Q
    | |||||||||||    
T  10927804 tagatcccattga 10927792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 56; Significance: 5e-23; HSPs: 3)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 4 - 164
Target Start/End: Complemental strand, 49116 - 48954
Alignment:
Q  4 catcagtctcctccacctctaaagaactcgaccccgagttcttattatgataaga-agcttcc---catgttgactcatccaacgaacaagagaccgccc 99  Q
    |||||||||||||||||||| |||||||| |||||||||||||||| |||||| | | |||||   ||||||||||| ||| | ||||| |||| | |||    
T  49116 catcagtctcctccacctctgaagaactcaaccccgagttcttattctgataaaagaacttccatgcatgttgactcttcctatgaacacgagaacaccc 49017  T
Q  100 tcctggatcccattgagtgaaatgcaaagatgacttggtttgaaaaatatagtaattgcctttat 164  Q
     || ||||||||||||||||||| |||  | |  |||||||||||||||||| | ||||||||||    
T  49016 acccggatcccattgagtgaaatacaa--aaggtttggtttgaaaaatatagcagttgcctttat 48954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 104
Target Start/End: Complemental strand, 10453 - 10349
Alignment:
Q  4 catcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcccatg----ttgactcatccaacgaacaagagaccgccc 99  Q
    |||||||||| ||||||||||| ||| | |||||| |||||| ||||||||||  |||||||||||    ||||||| ||||| |||||||||||  |||    
T  10453 catcagtctcatccacctctaaggaaatagaccccaagttctcattatgataaagagcttcccatgaatattgactcctccaatgaacaagagacaaccc 10354  T
Q  100 tcctg 104  Q
    |||||    
T  10353 tcctg 10349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 122
Target Start/End: Complemental strand, 37517 - 37396
Alignment:
Q  4 catcagtctcctccacctctaaagaactcgaccccgagttcttattatgataaga-agcttcc---catgttgactcatccaacgaacaagagaccgccc 99  Q
    |||||||||||||||||||| |||||||||| ||| | |||||||| |||||| | |||||||   ||||||||||| ||| | ||||  |||| |||||    
T  37517 catcagtctcctccacctctgaagaactcga-cccaaattcttattctgataaaagagcttccatgcatgttgactcttcctatgaaccggagaacgccc 37419  T
Q  100 tcctggatcccattgagtgaaat 122  Q
      | |||||||||||||| ||||    
T  37418 aaccggatcccattgagtaaaat 37396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 4 - 131
Target Start/End: Original strand, 11001109 - 11001240
Alignment:
Q  4 catcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcc----catgttgactcatccaacgaacaagagaccgccc 99  Q
    |||||||||||||||||||| |||||||||||||| | |||| ||| ||||||  |||||||    |||||| |||| ||||| ||| |||||| |  ||    
T  11001109 catcagtctcctccacctctgaagaactcgaccccaaattctcattgtgataaagagcttcccatgcatgttaactcctccaatgaaaaagagatcatcc 11001208  T
Q  100 tcctggatcccattgagtgaaatgcaaagatg 131  Q
    |||||||||||||||||||||||| |||||||    
T  11001209 tcctggatcccattgagtgaaatgtaaagatg 11001240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 2 - 129
Target Start/End: Complemental strand, 1369620 - 1369488
Alignment:
Q  2 tgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttccc----atgttgactcatccaacgaac-aagagaccg 96  Q
    ||||| |||||||||||||||| |||||||||| |||||||||||||| ||||||  ||||||||    |||||||||| ||||| |||| ||| ||||     
T  1369620 tgcatgagtctcctccacctctgaagaactcgagcccgagttcttattctgataaagagcttcccatgaatgttgactcctccaatgaacaaagcgacca 1369521  T
Q  97 ccctcctggatcccattgagtgaaatgcaaaga 129  Q
    ||||||  ||||||||||| |||||| ||||||    
T  1369520 ccctccacgatcccattgaatgaaattcaaaga 1369488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 1217492 - 1217665
Alignment:
Q  1 ctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcc---catgttgactcatccaacgaacaagagaccgc 97  Q
    ||||||||||||||||||||| | ||||||||||||| ||||||   || ||||||  || || |   ||||| |  || |||||  ||||||||||| |    
T  1217492 ctgcatcagtctcctccacctttgaagaactcgaccc-gagttcacgttttgataaagagatttcatgcatgtcgtgtcctccaattaacaagagaccac 1217590  T
Q  98 cctcctggatcccattgagtgaaatgcaaagatgacttggtttgaaaaatatagtaattgcctttatgccattga 172  Q
    ||||||||||||||| || ||||||| ||||||    ||||||||||||||||| | |||||||||| |||||||    
T  1217591 cctcctggatcccatagaatgaaatgtaaagatagtctggtttgaaaaatatagcagttgcctttatcccattga 1217665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 69
Target Start/End: Complemental strand, 4303211 - 4303146
Alignment:
Q  4 catcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcccatg 69  Q
    |||||||||||||||||||| |||||||||| |||||||||| ||| ||||||  |||||||||||    
T  4303211 catcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatg 4303146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 4 - 127
Target Start/End: Original strand, 8915456 - 8915582
Alignment:
Q  4 catcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcc---catgttgactcatccaacgaacaagagaccgccct 100  Q
    ||||||||||||||| |||| ||||||| |||||||| |||| ||| | |||| ||||| ||   ||||||||||| ||| | ||||||||||||  |||    
T  8915456 catcagtctcctccatctctgaagaactagaccccgaattctcattctaataaaaagctcccatgcatgttgactcctccgatgaacaagagaccaacct 8915555  T
Q  101 cctggatcccattgagtgaaatgcaaa 127  Q
     || ||| |||||| ||||||||||||    
T  8915556 tctagatgccattgggtgaaatgcaaa 8915582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 13883015 - 13883141
Alignment:
Q  1 ctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttccc------atgttgactcatccaacgaacaagagac 94  Q
    ||||||||||||| |||||||||||||||||||| |||||||||| ||| | ||||  || ||| |      |||||| ||| |||||  ||||||||||    
T  13883015 ctgcatcagtctcgtccacctctaaagaactcga-cccgagttctcattctaataaagagattctcatgcatatgttggctcctccaataaacaagagac 13883113  T
Q  95 cgccctcctggatcccattgagtgaaat 122  Q
    | ||||||||||||||||||| ||||||    
T  13883114 caccctcctggatcccattgaatgaaat 13883141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 1786474 - 1786426
Alignment:
Q  8 agtctcctccacctctaaagaactcgaccccgagttcttattatgataa 56  Q
    |||||||||||||||| |||||||||||| |||||||| ||| ||||||    
T  1786474 agtctcctccacctctgaagaactcgacctcgagttctcattttgataa 1786426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 109 - 173
Target Start/End: Original strand, 11001256 - 11001320
Alignment:
Q  109 ccattgagtgaaatgcaaagatgacttggtttgaaaaatatagtaattgcctttatgccattgaa 173  Q
    ||||||||||||||| |||||||  ||| |||| ||||||||  | |||||||||||||||||||    
T  11001256 ccattgagtgaaatgtaaagatggtttgttttggaaaatataacagttgcctttatgccattgaa 11001320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 300
Target Start/End: Original strand, 3365578 - 3365616
Alignment:
Q  262 tccatgttgtgcattaggatcttccacaaccattcctct 300  Q
    ||||||||||||| |||||||||||||| ||||||||||    
T  3365578 tccatgttgtgcactaggatcttccacagccattcctct 3365616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 54; Significance: 8e-22; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 84 - 173
Target Start/End: Original strand, 144274 - 144363
Alignment:
Q  84 gaacaagagaccgccctcctggatcccattgagtgaaatgcaaagatgacttggtttgaaaaatatagtaattgcctttatgccattgaa 173  Q
    |||||||||||  |||| |||||||||||||| |||||||||||||||  ||| |||||||||||||||| |||||||||| ||||||||    
T  144274 gaacaagagacgacccttctggatcccattgaatgaaatgcaaagatggtttgatttgaaaaatatagtagttgcctttatcccattgaa 144363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 102 - 170
Target Start/End: Complemental strand, 145432 - 145364
Alignment:
Q  102 ctggatcccattgagtgaaatgcaaagatgacttggtttgaaaaatatagtaattgcctttatgccatt 170  Q
    |||||||||||||||| |||| |||| |||  ||| |||||||||||||| | |||||||||| |||||    
T  145432 ctggatcccattgagtaaaatacaaatatggtttgatttgaaaaatatagcagttgcctttatcccatt 145364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 8 - 148
Target Start/End: Original strand, 34374074 - 34374218
Alignment:
Q  8 agtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcc----catgttgactcatccaacgaacaagagaccgccctcct 103  Q
    |||||||||||| ||| |||||||| |||||||||||| ||| ||||||  || ||||    ||||||||||| ||||| |||||||||||| | ||| |    
T  34374074 agtctcctccacatctgaagaactccaccccgagttctcattttgataaagagattcccatgcatgttgactcttccaatgaacaagagaccactctctt 34374173  T
Q  104 ggatcccattgagtgaaatgcaaagatgacttggtttgaaaaata 148  Q
    ||||||||||||||||| |||  |||||  ||| |||||||||||    
T  34374174 ggatcccattgagtgaattgcggagatggtttgatttgaaaaata 34374218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 4 - 114
Target Start/End: Complemental strand, 22873614 - 22873500
Alignment:
Q  4 catcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcccatg----ttgactcatccaacgaacaagagaccgccc 99  Q
    |||||||||| ||||||||||| ||| |||| ||| |||||| ||||||||||  |||||||||||    ||||||| ||||| |||||||||||  |||    
T  22873614 catcagtctcatccacctctaaggaaatcgatcccaagttctcattatgataaagagcttcccatgcatattgactcctccaatgaacaagagacaaccc 22873515  T
Q  100 tcctggatcccattg 114  Q
    |||||||||||||||    
T  22873514 tcctggatcccattg 22873500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 4 - 130
Target Start/End: Complemental strand, 18203238 - 18203109
Alignment:
Q  4 catcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcccatg----ttgactcatccaacgaacaagagaccgccc 99  Q
    |||||||||||||||||||| ||||||||||||| ||||||| ||| | ||||  || || |||||    ||||||| || || |||||||||||| |||    
T  18203238 catcagtctcctccacctctgaagaactcgaccc-gagttctcattttaataaagagttttccatgcatgttgactcctcgaatgaacaagagaccaccc 18203140  T
Q  100 tcctggatcccattgagtgaaatgcaaagat 130  Q
    |||| ||||||||| |||||||||| |||||    
T  18203139 tcctagatcccattcagtgaaatgccaagat 18203109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 123
Target Start/End: Original strand, 12778692 - 12778813
Alignment:
Q  4 catcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcc----catgttgactcatccaacgaacaagagaccgccc 99  Q
    |||||||||||||||||||| ||||||| |||||| | |||| ||| |||||   || ||||    ||||||||||| ||||| |||||||||||  |||    
T  12778692 catcagtctcctccacctctgaagaacttgaccccaaattctcattctgatag--agtttcctttgcatgttgactcctccaatgaacaagagacaaccc 12778789  T
Q  100 tcctggatcccattgagtgaaatg 123  Q
    || ||||||||||| |||||||||    
T  12778790 tcttggatcccattaagtgaaatg 12778813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 112
Target Start/End: Complemental strand, 12881826 - 12881715
Alignment:
Q  4 catcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcc----catgttgactcatccaacgaacaagagaccgccc 99  Q
    ||||||||||||||||||   ||||||||||||||||| ||| |||  |||||||| |||||    ||||||||||  | ||| |||||||||||| |||    
T  12881826 catcagtctcctccacctaagaagaactcgaccccgagctctcattccgataagaa-cttcccatgcatgttgacttcttcaatgaacaagagaccaccc 12881728  T
Q  100 tcctggatcccat 112  Q
    |||||||||||||    
T  12881727 tcctggatcccat 12881715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 104
Target Start/End: Complemental strand, 22889057 - 22888953
Alignment:
Q  4 catcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcccatg----ttgactcatccaacgaacaagagaccgccc 99  Q
    |||||||||| ||||||||||| ||| | |||||| |||||| ||||||||||  |||||||||||    ||||||| ||||| |||||||||||  |||    
T  22889057 catcagtctcatccacctctaaggaaatagaccccaagttctcattatgataaagagcttcccatgcatattgactcctccaatgaacaagagacaaccc 22888958  T
Q  100 tcctg 104  Q
    |||||    
T  22888957 tcctg 22888953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 104
Target Start/End: Complemental strand, 22910600 - 22910496
Alignment:
Q  4 catcagtctcctccacctctaaagaactcgaccccgagttcttattatgataagaagcttcccatg----ttgactcatccaacgaacaagagaccgccc 99  Q
    |||||||||| ||||||||||| ||| | |||||| |||||| ||||||||||  |||||||||||    ||||||| ||||| |||||||||||  |||    
T  22910600 catcagtctcatccacctctaaggaaatagaccccaagttctcattatgataaagagcttcccatgtatattgactcctccaatgaacaagagacaaccc 22910501  T
Q  100 tcctg 104  Q
    |||||    
T  22910500 tcctg 22910496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 3542001 - 3541960
Alignment:
Q  4 catcagtctcctccacctctaaagaactcgaccccgagttct 45  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  3542001 catcagtctcctccacctctgaagaactcgaccccgagttct 3541960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 30049671 - 30049630
Alignment:
Q  4 catcagtctcctccacctctaaagaactcgaccccgagttct 45  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  30049671 catcagtctcctccacctctgaagaactcgaccccgagttct 30049630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 30051958 - 30051917
Alignment:
Q  4 catcagtctcctccacctctaaagaactcgaccccgagttct 45  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  30051958 catcagtctcctccacctctgaagaactcgaccccgagttct 30051917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 32361157 - 32361106
Alignment:
Q  8 agtctcctccacctctaaagaactcgaccccgagttcttattatgataagaa 59  Q
    ||||| ||||||||||||| ||||||||| |||||||| |||||||||||||    
T  32361157 agtcttctccacctctaaaaaactcgacctcgagttctcattatgataagaa 32361106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 173
Target Start/End: Original strand, 8047760 - 8047836
Alignment:
Q  97 ccctcctggatcccattgagtgaaatgcaaagatgacttggtttgaaaaatatagtaattgcctttatgccattgaa 173  Q
    ||||||| ||||||||||||| ||||| |||||||  ||  |||||||||||||| |||| || |||||||| ||||    
T  8047760 ccctcctcgatcccattgagtaaaatgtaaagatggtttaatttgaaaaatatagcaatttccattatgccagtgaa 8047836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 8047661 - 8047704
Alignment:
Q  2 tgcatcagtctcctccacctctaaagaactcgaccccgagttct 45  Q
    |||||| ||||||||||||||| ||||||| |||||||||||||    
T  8047661 tgcatcggtctcctccacctctgaagaacttgaccccgagttct 8047704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 300
Target Start/End: Complemental strand, 16721771 - 16721733
Alignment:
Q  262 tccatgttgtgcattaggatcttccacaaccattcctct 300  Q
    ||||||||||||| |||||||||||||| ||||||||||    
T  16721771 tccatgttgtgcactaggatcttccacagccattcctct 16721733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 18720069 - 18720020
Alignment:
Q  7 cagtctcctccacctctaaagaactcgaccccgagttcttattatgataa 56  Q
    ||||||||||||||| | |||||||||||||||| |||| ||| ||||||    
T  18720069 cagtctcctccacctttgaagaactcgaccccgaattctaattttgataa 18720020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 4 - 45
Target Start/End: Original strand, 45951 - 45992
Alignment:
Q  4 catcagtctcctccacctctaaagaactcgaccccgagttct 45  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  45951 catcagtctcctccacctctgaagaactcgaccccgagttct 45992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 131
Target Start/End: Complemental strand, 15741 - 15676
Alignment:
Q  66 catgttgactcatccaacgaacaagagaccgccctcctggatcccattgagtgaaatgcaaagatg 131  Q
    ||||||||||| ||||| ||||| |||||| ||||||  | ||||||||| ||||||| |||||||    
T  15741 catgttgactcctccaatgaacaggagaccaccctccaaggtcccattgaatgaaatgaaaagatg 15676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University