View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8587_low_6 (Length: 451)
Name: NF8587_low_6
Description: NF8587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8587_low_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 384; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 18 - 445
Target Start/End: Complemental strand, 38868431 - 38868004
Alignment:
| Q |
18 |
agatgttcacaaattagaacagttatatgcttttaccataatcaaaagtactttggaagactgtaggaatgtctttgagaggaaagtctatataagacta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38868431 |
agatgttcacaaattagaacagttatatgcttttaccataatcaaaagtactttggaagactataggaatgtctttgagaggaaagtctatataagacta |
38868332 |
T |
|
| Q |
118 |
gaagataactttgacatattgaaggattcaaagccactagatttgaggccaggttaatttctgtggtgcagctgaatcatttgacatgattaagagccgg |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
38868331 |
gaagataactttgacatattgaaggattcaaagccactagatttgagaccaggttaatttctgtggtgcagctgaatcatttggcatgattaagagccgg |
38868232 |
T |
|
| Q |
218 |
caagtatatacatgccactataaacaagctcataaattattgtgtataatcatgagttatgatcagagtgggtaaatttgcatatgatgtgtgacatgca |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
38868231 |
caagtatatacatgccactataaacaagctcataaattattgtgtataatcatgacttatgatcagagtgggtaaatatgcatatgatatgtgacatgca |
38868132 |
T |
|
| Q |
318 |
tatttccaacataagatcattaattgtcttgggagcaataaaatgtcccacatcttttaaaacatagaatatgcaatggtttatatccttccaacacagc |
417 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
38868131 |
tatttccaacataagaccattaattgtcttgggagcaataaaatgtctcacatcgtttaaaacatagaatatgcaatggtttatgtccttccaacacagc |
38868032 |
T |
|
| Q |
418 |
caattgtttgctgattgattaacaccaa |
445 |
Q |
| |
|
|||||||| ||||||||||||||||||| |
|
|
| T |
38868031 |
caattgttagctgattgattaacaccaa |
38868004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 295 - 445
Target Start/End: Original strand, 38807226 - 38807377
Alignment:
| Q |
295 |
ttgcatatgatgtgtgacatgcatatttccaacataagatcattaattgtcttgggagcaataaaatgtcccacatcttttaaaacatagaatatgcaat |
394 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
38807226 |
ttgcatatgatgtgtgacatgcatatttccaacataagaccactaactgtcttgggagcaataaaatgtcccacatcgtttaaaacataattaatgcaat |
38807325 |
T |
|
| Q |
395 |
ggtttatatccttccaacacagccaattgtttgctga-ttgattaacaccaa |
445 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
38807326 |
ggtttataggcttccaacacagccaattgtttgctgagttgattaacaccaa |
38807377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 295 - 445
Target Start/End: Complemental strand, 38866193 - 38866041
Alignment:
| Q |
295 |
ttgcatatgatgtgtgacatgcatatttccaacataagatcattaattgtcttggg-agcaataaaatgtcccacatcttttaaaacatagaatatgcaa |
393 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| || || ||||||||| ||||||||||||||||||||| ||| |||||| ||||||||| |
|
|
| T |
38866193 |
ttgcatatgacctgtgacatgcatatttccaacataagaccaccaagtgtcttggggagcaataaaatgtcccacatcggttagaacataaaatatgcaa |
38866094 |
T |
|
| Q |
394 |
tggtttatatccttccaacacagccaattgtttgctga-ttgattaacaccaa |
445 |
Q |
| |
|
| ||||||| ||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
38866093 |
ttgtttataaacttccaacacagccaattgttcgctgagttgattaacaccaa |
38866041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 350 - 445
Target Start/End: Complemental strand, 39310881 - 39310785
Alignment:
| Q |
350 |
gagcaataaaatgtcccacatcttttaaaacatagaatatgcaatggtttatatccttccaacacagccaattgtttgctga-ttgattaacaccaa |
445 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||| ||||||| |
|
|
| T |
39310881 |
gagcaataaaatgtcccacatcgtttaaaacatagaatatgcaatggtttataaacttccaacacagccaattgttcgctgagttgatttacaccaa |
39310785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 350 - 445
Target Start/End: Original strand, 38749953 - 38750049
Alignment:
| Q |
350 |
gagcaataaaatgtcccacatcttttaaaacatagaatatgcaatggtttatatccttccaacacagccaattgtttgctga-ttgattaacaccaa |
445 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||||||||| ||||||||||| |||||||||||||||| ||||||||||| |||| ||||||||| |
|
|
| T |
38749953 |
gagcaataaaatgtcccacatcgtttagaacatagaatatgaaatggtttataaccttccaacacagccatttgtttgctgagttgaataacaccaa |
38750049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 350 - 445
Target Start/End: Complemental strand, 38849149 - 38849053
Alignment:
| Q |
350 |
gagcaataaaatgtcccacatcttttaaaacatagaatatgcaatggtttatatccttccaacacagccaattgtttgctga-ttgattaacaccaa |
445 |
Q |
| |
|
|||||||||||||||||||||| |||| |||| || ||||| || |||||||| |||||||||||| | ||||||||||| |||||||||||||| |
|
|
| T |
38849149 |
gagcaataaaatgtcccacatcgtttagaacaaagcatatgaaacggtttataagcttccaacacagggatttgtttgctgagttgattaacaccaa |
38849053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University