View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8587_low_8 (Length: 378)
Name: NF8587_low_8
Description: NF8587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8587_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 57 - 360
Target Start/End: Complemental strand, 5293278 - 5292974
Alignment:
| Q |
57 |
ataatttgtggttgtgctcaaatccaaaatatttgtgtgtgaccatatatcataatatctcatgatttaagtagtgatatatatatac-tccatatgatt |
155 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||| |
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| T |
5293278 |
ataatttgtggttgtgctcaaatccaaaatatttgtgtgtgaccatatatcataatatctcatgatttaaggagtgatatatatatatatatatatgatt |
5293179 |
T |
|
| Q |
156 |
agatgtgggtataaaacttatttacactctcggtataaactcataacaaattactattataaacacgtaacaaacagcaggagaataatggtcacaactc |
255 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5293178 |
agatgtgggtataaaacttatttacactctcggtataaactcataacaaattactattataaacacgtaacaaacagcaggagaataatggtcacaactc |
5293079 |
T |
|
| Q |
256 |
ttggaaataatcacttctcagagtctgtcctgctgatgtaaggaacaaaaactattcaaattcaagctccaaaaatggcttactttgataacacaatagg |
355 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5293078 |
ttggaaataatcacttctcagagtctgtcctgctgatgtaaggaacaaaaactattcaaattcaagctccaaaaatggcttactttgataacacaatagg |
5292979 |
T |
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| Q |
356 |
taact |
360 |
Q |
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||||| |
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| T |
5292978 |
taact |
5292974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 304 - 360
Target Start/End: Complemental strand, 14952247 - 14952191
Alignment:
| Q |
304 |
aaactattcaaattcaagctccaaaaatggcttactttgataacacaataggtaact |
360 |
Q |
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|||| |||||||||||||||||||||||| |||||||| | |||||||||||||||| |
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| T |
14952247 |
aaaccattcaaattcaagctccaaaaatgacttactttaacaacacaataggtaact |
14952191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 341
Target Start/End: Original strand, 15123439 - 15123471
Alignment:
| Q |
309 |
attcaaattcaagctccaaaaatggcttacttt |
341 |
Q |
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||||||||||||||||||||||||||| ||||| |
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| T |
15123439 |
attcaaattcaagctccaaaaatggctaacttt |
15123471 |
T |
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