View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8588_low_1 (Length: 600)
Name: NF8588_low_1
Description: NF8588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8588_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 163; Significance: 9e-87; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 20 - 194
Target Start/End: Original strand, 32803423 - 32803597
Alignment:
| Q |
20 |
cagataaccctccttgaattgtccaccaaggattagccagaactgctgttgtagtatttctacacttaagaagaagaagatgatgcttttgttgatgata |
119 |
Q |
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| T |
32803423 |
cagataaccctccttgaattgtccaccaaggattagccagaactgctgttgtagtatttctacacttaagaagaagaagatgatgcttttgttgatgatg |
32803522 |
T |
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| Q |
120 |
ttatgagaaaacaattgagcttgattagttttgtttgatttcagttgtttgttttgatgtatgaaatatagggat |
194 |
Q |
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| T |
32803523 |
ttatgagaaaacaattgagcttgattagttttgtttgatttcagatgtttgttttgatgtttgaaatatagggat |
32803597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 446 - 596
Target Start/End: Original strand, 32803844 - 32803994
Alignment:
| Q |
446 |
attctattggttacaagatagaagagataccaaacctttcagagactcaactcaagtaaaaagagagagaattaagaaataaaaatttagaacatagaca |
545 |
Q |
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| T |
32803844 |
attctattggttacaagatagaagagataccaaacctttcagagactcaactcaagtaaaaagagagagaattaagaaataaaaatttagaacatagaca |
32803943 |
T |
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| Q |
546 |
gtgagacaaagatgttataataatgaagtaatttgagaagaacacgaaact |
596 |
Q |
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| T |
32803944 |
gtgagacaaagatgttataataatgaagtaatttgagaagaacacgaaact |
32803994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 244 - 392
Target Start/End: Original strand, 32803647 - 32803792
Alignment:
| Q |
244 |
ggatatgtatgtttatgatgacctaacatatgatgctcactcactaacttactcaaatggatgatgatagggtaaaggaaagtgatgaggtgcttagaag |
343 |
Q |
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| T |
32803647 |
ggatatgtatgtttatgatgacctaacatatgatgctcactcactaacttactcaaatggatgatgatagggtaaaggaaagtgat---gtgcttagaag |
32803743 |
T |
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| Q |
344 |
agagaattagatgcaattattggatgagaatcaagtaaggggtttgatt |
392 |
Q |
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| T |
32803744 |
agagaattagatgcaattattggatgagaatcaagtaaggggtttgatt |
32803792 |
T |
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