View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8588_low_2 (Length: 585)
Name: NF8588_low_2
Description: NF8588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8588_low_2 |
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| [»] scaffold0175 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 12 - 570
Target Start/End: Complemental strand, 43743237 - 43742697
Alignment:
| Q |
12 |
agagacatggaggaaagaaaatgtgnnnnnnnntctaatggtgaaagagcatgataatactgtggtctttctttcatcaaatgactaaaaccaaactgat |
111 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
43743237 |
agagacatggaggaaagaaaatgtgaaaaaaaatctaatggtgaaagagcatgataatactgtggtcttcctttgatcaaatgactaaaaccaaactgat |
43743138 |
T |
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| Q |
112 |
ccatggtggaaaagttttagactttccgatgtgaaatagcaccaaacttacaagcgcaagagaaaaagctacacttgaaataaagaaagacacaagtgct |
211 |
Q |
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| T |
43743137 |
ccat--------------aaactttcccatatgaaatagcaccaaacttacaagcgcaagagaaaaagctacacttgaaataaagaaagacacaagtgct |
43743052 |
T |
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| Q |
212 |
attcatttcatacactttccatcaaaatattatacacttgtattgagctagaaacgtcatcattctctttgtgtgagtaaactccgtactacatcaaata |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| || |
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| T |
43743051 |
attcatttcatacactttccatcaaaatattatacacttgtattgagctagaaacgtcatcattctctctgtgtgagtaaactctgtacttg------ta |
43742958 |
T |
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| Q |
312 |
tcttatcattgatgtaaactcttcaaagtactaagttgtagacagactttggaaatgcaacgagacttagttacgcggatctttctaatgagaaatataa |
411 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43742957 |
tcttatcattgatgtaaactcttcaaagtaccaagttgtagacagactttggaaatgcaacgagacttagttacgcggatctttctaatgagaaatataa |
43742858 |
T |
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| Q |
412 |
ggtattgtcatgtagataaagatatatcttagtgtttgtaa-tgattcacattataatggatgaagtcctccaccaccttctctttcactttgc-nnnnn |
509 |
Q |
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| T |
43742857 |
ggtattgtcatgtagataaagatatatcttagtgtttgtaattgattcacattataatggatgaagtcctccaccaccttctctttcactttgcaaaaaa |
43742758 |
T |
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| Q |
510 |
nnctttccaaaacaacaatgatggcgacaaagatctcaactcccttgatgagcttggagat |
570 |
Q |
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| T |
43742757 |
gactttccaaaacaacaatgatggcgacgaagatctcaactcccttgatgagcttggagat |
43742697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 8e-41; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 12 - 154
Target Start/End: Original strand, 11335024 - 11335165
Alignment:
| Q |
12 |
agagacatggaggaaagaaaatgtgnnnnnnnntctaatggtgaaagagcatgataatactgtggtctttctttcatcaaatgactaaaaccaaactgat |
111 |
Q |
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||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||| |
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| T |
11335024 |
agagacatggaggaaagaaaatgtgaaaaaaa-tctagtggtgaaagagcatgataatactgtggtcttcctttgatgaaatgactaaaaccaaactgat |
11335122 |
T |
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| Q |
112 |
ccatggtggaaaagttttagactttccgatgtgaaatagcacc |
154 |
Q |
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| T |
11335123 |
ccatggtggaaaagttttagactttctcatgtgaaataacacc |
11335165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 53 - 157
Target Start/End: Original strand, 32079738 - 32079842
Alignment:
| Q |
53 |
tgaaagagcatgataatactgtggtctttctttcatcaaatgactaaaaccaaactgatccatggtggaaaagttttagactttccgatgtgaaatagca |
152 |
Q |
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||||||||||||||||| ||||||| || |||| || |||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||| || |
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| T |
32079738 |
tgaaagagcatgataatgctgtggtattcctttgattaaatgattaaaaccaaactgatccatggtgggaaagttttagactttcccatgtgaaatgcca |
32079837 |
T |
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| Q |
153 |
ccaaa |
157 |
Q |
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| T |
32079838 |
ccaaa |
32079842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0175 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0175
Description:
Target: scaffold0175; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 148
Target Start/End: Complemental strand, 26314 - 26269
Alignment:
| Q |
103 |
caaactgatccatggtggaaaagttttagactttccgatgtgaaat |
148 |
Q |
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| T |
26314 |
caaactgacccatggtggaaaagttttacactttcccatgttaaat |
26269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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