View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8588_low_4 (Length: 437)
Name: NF8588_low_4
Description: NF8588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8588_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 3e-86; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 180 - 420
Target Start/End: Complemental strand, 31855263 - 31855022
Alignment:
| Q |
180 |
attttgattcctttttaaattactcctaaaatacatattacaaatcaactaagcaaaagtgattgaattgcaagttgta-aacattataagataacttgc |
278 |
Q |
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| T |
31855263 |
attttggttcctttttaaattacaccaaaaatacatattacaaatcaactaagcaaaagtaatcgaattgaaagttgtacaacattgtaagataaattac |
31855164 |
T |
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| Q |
279 |
cactatcaacaatccttcatgcatatcactagagatacccttgaaaaccttttcaatacataagtggaagtaaatctaaataaaacctggcagagttaga |
378 |
Q |
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| T |
31855163 |
cactataaacaatccttcatggatatcactagggatacccttggaaacctttttcatacataagtgcaagtaaatctaaataaaaccaggcagagttaga |
31855064 |
T |
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| Q |
379 |
gtttcaactaggccactcaaattgacctgctccactttagat |
420 |
Q |
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| T |
31855063 |
gtttcaactagaccactcaaattgacctgctccactttagat |
31855022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 48 - 272
Target Start/End: Complemental strand, 9092005 - 9091782
Alignment:
| Q |
48 |
tgaaggaaacattccttatcatttttctttttcatgtgaacctattgtattttgcattgttatgatgttgttgcttaatgattcatggnnnnnnnntgag |
147 |
Q |
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| T |
9092005 |
tgaaggaaacagtccttataattcttctttttcatgtgagtctattgaattttgcattgatatgatgttgttgtttaatgattcatg-aaacaaaatgag |
9091907 |
T |
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| Q |
148 |
tttttattctacactttatataatcaacttaaattttgattcctttttaaattactcctaaaatacatattacaaatcaactaagcaaaagtgattgaat |
247 |
Q |
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| T |
9091906 |
tttgtattcttcactttgaataatcaacttatattttgattcctttttaaattactccaaaaatacatattacaaatcaactaagctaaagtcattgaat |
9091807 |
T |
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| Q |
248 |
tgcaagttgtaaacattataagata |
272 |
Q |
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| T |
9091806 |
tgcaagttgtaaacgttataggata |
9091782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 301 - 421
Target Start/End: Complemental strand, 9091784 - 9091664
Alignment:
| Q |
301 |
atatcactagagatacccttgaaaaccttttcaatacataagtggaagtaaatctaaataaaacctggcagagttagagtttcaactaggccactcaaat |
400 |
Q |
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|||||||||| |||||||||| |||||||||| ||| |||||| |||||||||||||||| ||| ||||||||||||||||||| |||||||||||||| |
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| T |
9091784 |
atatcactagggatacccttggaaaccttttccatatataagtacaagtaaatctaaataataccgggcagagttagagtttcaagtaggccactcaaat |
9091685 |
T |
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| Q |
401 |
tgacctgctccactttagatt |
421 |
Q |
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| T |
9091684 |
tgacctgctccactttagatt |
9091664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 195
Target Start/End: Complemental strand, 31855319 - 31855277
Alignment:
| Q |
153 |
attctacactttatataatcaacttaaattttgattccttttt |
195 |
Q |
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| T |
31855319 |
attctacactttgtataatcaacttatattttgattccttttt |
31855277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 31855369 - 31855317
Alignment:
| Q |
18 |
taattctagttctaaatgaattatgatttctgaaggaaacattccttatcatt |
70 |
Q |
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| T |
31855369 |
taatgctagttctaaattaattacgatttctgaaggaaacaccccttatcatt |
31855317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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