View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8588_low_7 (Length: 246)

Name: NF8588_low_7
Description: NF8588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8588_low_7
NF8588_low_7
[»] chr4 (6 HSPs)
chr4 (20-223)||(24718668-24718871)
chr4 (88-143)||(1017111-1017166)
chr4 (75-130)||(54277242-54277297)
chr4 (101-133)||(18628498-18628530)
chr4 (101-145)||(22471355-22471399)
chr4 (101-145)||(39178211-39178255)
[»] chr5 (1 HSPs)
chr5 (108-145)||(7907963-7908000)
[»] chr2 (3 HSPs)
chr2 (103-144)||(34927045-34927086)
chr2 (109-145)||(5902502-5902538)
chr2 (101-145)||(29430839-29430883)
[»] chr8 (1 HSPs)
chr8 (101-145)||(2487953-2487997)
[»] chr7 (1 HSPs)
chr7 (109-145)||(48131418-48131454)


Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 24718871 - 24718668
Alignment:
Q  20 ctgaaaatttcgaggtaaaaacaaatgtatattaaaagaaagaaacctaaggggatgtttagatttaattatatgaactactctactgacataaacactt 119  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24718871 ctgaaaatttcgacgtaaaaacaaatgtatattaaaagaaagaaacctaaggggatgtttagatttaattatatgaactactctactgacataaacactt 24718772  T
Q  120 atgagactgtttggacgaacttatgacatgttcttaagttattgaaaggaagatcatataaaacaatgacatttgaagaagaatatttatatataggtag 219  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  24718771 atgagactgtttggtcgaacttatgacatgttcttaagttattgaaaggaagatcatataaaataatgacatttgaagaagaatatttatatataggtag 24718672  T
Q  220 taga 223  Q
    ||||    
T  24718671 taga 24718668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 143
Target Start/End: Complemental strand, 1017166 - 1017111
Alignment:
Q  88 ttatatgaactactctactgacataaacacttatgagactgtttggacgaacttat 143  Q
    |||| ||| ||| ||||||||||||||||||| |||||||||||||| ||||||||    
T  1017166 ttatttgagctaatctactgacataaacacttgtgagactgtttggaagaacttat 1017111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 130
Target Start/End: Original strand, 54277242 - 54277297
Alignment:
Q  75 tgtttagatttaattatatgaactactctactgacataaacacttatgagactgtt 130  Q
    |||||||||| | |||| ||||||  |||| |||||||||||||||||||||||||    
T  54277242 tgtttagattgacttatttgaacttatctagtgacataaacacttatgagactgtt 54277297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 133
Target Start/End: Original strand, 18628498 - 18628530
Alignment:
Q  101 tctactgacataaacacttatgagactgtttgg 133  Q
    ||||||||||||||||||| |||||||||||||    
T  18628498 tctactgacataaacacttgtgagactgtttgg 18628530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 22471399 - 22471355
Alignment:
Q  101 tctactgacataaacacttatgagactgtttggacgaacttatga 145  Q
    ||||||||||||| ||||| |||||||||||||  ||||||||||    
T  22471399 tctactgacataagcacttgtgagactgtttgggagaacttatga 22471355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 39178211 - 39178255
Alignment:
Q  101 tctactgacataaacacttatgagactgtttggacgaacttatga 145  Q
    ||||||||||||||||||| ||| |||||||||  ||||||||||    
T  39178211 tctactgacataaacacttttgacactgtttgggagaacttatga 39178255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 145
Target Start/End: Complemental strand, 7908000 - 7907963
Alignment:
Q  108 acataaacacttatgagactgtttggacgaacttatga 145  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  7908000 acataaacacttatgagactgtttggaagaacttatga 7907963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 144
Target Start/End: Complemental strand, 34927086 - 34927045
Alignment:
Q  103 tactgacataaacacttatgagactgtttggacgaacttatg 144  Q
    ||||||||||| ||||||| |||||||||||| |||||||||    
T  34927086 tactgacataagcacttataagactgtttggaagaacttatg 34927045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 145
Target Start/End: Original strand, 5902502 - 5902538
Alignment:
Q  109 cataaacacttatgagactgtttggacgaacttatga 145  Q
    ||||||||||| |||||||||||||| ||||||||||    
T  5902502 cataaacacttgtgagactgtttggaagaacttatga 5902538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 29430883 - 29430839
Alignment:
Q  101 tctactgacataaacacttatgagactgtttggacgaacttatga 145  Q
    ||||||||||||||||||| || |||| |||||| ||||||||||    
T  29430883 tctactgacataaacacttgtgggactatttggaagaacttatga 29430839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 2487953 - 2487997
Alignment:
Q  101 tctactgacataaacacttatgagactgtttggacgaacttatga 145  Q
    ||||||||||||| ||||| |||||||||||||  ||||||||||    
T  2487953 tctactgacataagcacttgtgagactgtttgggagaacttatga 2487997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 145
Target Start/End: Complemental strand, 48131454 - 48131418
Alignment:
Q  109 cataaacacttatgagactgtttggacgaacttatga 145  Q
    ||||| |||||||||||||||||||| ||||||||||    
T  48131454 cataagcacttatgagactgtttggaagaacttatga 48131418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University