View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8588_low_8 (Length: 222)
Name: NF8588_low_8
Description: NF8588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8588_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 3249319 - 3249105
Alignment:
| Q |
1 |
ctgacatgttgggcaaggtctctggtgctagaaaagactcacactctctgcctagaaagaatctaaagggcactgatttgatgcataaagaaactgctga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3249319 |
ctgacatgttgggcaaggtctctggtgctagaaaagactcacactctctgcatagaaagaatctaaagggcactgatttgatgcataaagaaactgctga |
3249220 |
T |
|
| Q |
101 |
gcctgtgaactcccctgttaagattttcgaccttgaaacaaccaatactaaaaatacacattctgaacaggctgctactgaactacacaacataaccaac |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3249219 |
gcctgtgaactcccctgttaagattttcgaccttgaaacaaccaatactaaaaatacacattctgaacaggctgctactgaactacacaacataaccaac |
3249120 |
T |
|
| Q |
201 |
tcccctgatgtccat |
215 |
Q |
| |
|
||||||||| ||||| |
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| T |
3249119 |
tcccctgatttccat |
3249105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 5 - 209
Target Start/End: Original strand, 36905315 - 36905519
Alignment:
| Q |
5 |
catgttgggcaaggtctctggtgctagaaaagactcacactctctgcctagaaagaatctaaagggcactgatttgatgcataaagaaactgctgagcct |
104 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||| | ||| ||||||||||||||||||| | ||||||| | |
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| T |
36905315 |
catgttgggcaaggtatctggtgcttgaaaagactcacactctctgcctaccaagaatctagatggctctgatttgatgcataaagatattgctgagttt |
36905414 |
T |
|
| Q |
105 |
gtgaactcccctgttaagattttcgaccttgaaacaaccaatactaaaaatacacattctgaacaggctgctactgaactacacaacataaccaactccc |
204 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||| ||| |||||||||||||||||||||||||||||||||| ||| |
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| T |
36905415 |
gtgaactcccctgttaagattttcgaccttgaaaccaccaatactgaaaatgcacaatctaaacaggctgctactgaactacacaacataaccaattcct |
36905514 |
T |
|
| Q |
205 |
ctgat |
209 |
Q |
| |
|
||||| |
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| T |
36905515 |
ctgat |
36905519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 28102692 - 28102484
Alignment:
| Q |
1 |
ctgacatgttgggcaaggtctctggtgctagaaaagactcacactctctgcctagaaagaatctaaagggcactgatttgatgcataaagaaactgctga |
100 |
Q |
| |
|
|||||| |||||||||| ||||||||||| ||||||||||||||||||| ||||| ||||||||| | ||| |||||||||||||||||||||||| ||| |
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|
| T |
28102692 |
ctgacacgttgggcaagctctctggtgctcgaaaagactcacactctcttcctagcaagaatctagatggctctgatttgatgcataaagaaactgatga |
28102593 |
T |
|
| Q |
101 |
gcctgtgaactcccctgttaagattttcgaccttgaaacaaccaatactaaaaatacacattctgaacaggctgctactgaactacacaacataaccaac |
200 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||| ||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28102592 |
gcatgtgaactcccctgttaagattttcgaccttgaaaccaccaataatgaaaatacacaatctgaacaggctgctactgaactacacaacataaccaac |
28102493 |
T |
|
| Q |
201 |
tcccctgat |
209 |
Q |
| |
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||||||||| |
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|
| T |
28102492 |
tcccctgat |
28102484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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