View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8589_high_3 (Length: 346)
Name: NF8589_high_3
Description: NF8589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8589_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 34577472 - 34577802
Alignment:
| Q |
1 |
tcttgcgtatgtttctggtctttgtggtaatggtgtacaacccatagttgtcaaagcggaaatggtgtacaacctatcatactttcagtaggttatatag |
100 |
Q |
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| T |
34577472 |
tcttgcgtatgtttctggtctttgtggtaatggtgtacaacccatagttgtcaaagcggaaatggtgcacaacctatcatactttcagtaggttatatag |
34577571 |
T |
|
| Q |
101 |
atgatattaaagaacacaatcagtgggttttttacactagcaannnnnnnnccctttttgacttctaacttgtgtcattttatcactttcttaatcacat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34577572 |
atgatattaaagaacacaatcagtgggttttttacactagcaattttttttccctttttgacttctaacttgtgtcattttatcactttcttaatcacat |
34577671 |
T |
|
| Q |
201 |
gaattacttacatgttttatcatcttaatgcaaacttaaatgtctgtattatttattgtgcatcaatttgttttcttattcacattttttacttgtaacc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34577672 |
gaattacttacatgttttatcatcttaatgcaaacttaaatgtctgtattatttattgtgcatcaatttgttttcttattcacattttttacttgtaacc |
34577771 |
T |
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| Q |
301 |
tcctttcgtaccctaccagaggtattttgat |
331 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
34577772 |
tcctttcgtaccctaccagaggtattttgat |
34577802 |
T |
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