View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8589_low_1 (Length: 590)
Name: NF8589_low_1
Description: NF8589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8589_low_1 |
 | |
|
| [»] scaffold1148 (1 HSPs) |
| | |
|
| [»] scaffold0066 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 538; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 1 - 578
Target Start/End: Original strand, 30504690 - 30505267
Alignment:
| Q |
1 |
ggagccaccaaggccttgacgaatgcgtctctttttcgacggtttgtcacgttttattttactaattttccaccgttcttatcgaatttttatttacgaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30504690 |
ggagccaccaaggccttgacgaatgcggctctttttcgacggtatgtcacgttttattttactaattttccaccgttcttatcgaatttttatttacgaa |
30504789 |
T |
|
| Q |
101 |
aagggtttgaggtttgtggcatgctggacgaggttgtggtaccccgtaggtgcaatgttaacggggaacggtacggttttgtgagatactcgaatgtccg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
30504790 |
aagggtttgaggtttgtggcatgctggacgaggttgtggtaccccgtaggtgcaatgttaacggagaacggtacggttttgtgagatactcgaatgtccg |
30504889 |
T |
|
| Q |
201 |
agatgttagtaagttgttgaaagccgtgaatactgtttgctttggtaatttccaaattaaggcaaaagttgctaattttgacaaggcggcaactagagtg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30504890 |
ggatgttagtaagttgttgaaagccgtgaatactgtttgctttggtaatttccaaattaaggcaaaagttgctaattttgacaaggcggcagctagagtg |
30504989 |
T |
|
| Q |
301 |
gttgagaatttggtggttggcgcgggtgcgaaggataccgcgggaggaggtgttaaggttggtaagggagttaaatcagttgttgagggtgatgtgatgg |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30504990 |
gttgagaatttggtggttggcgcgggtgcgaaggataccgcgggaggaggtgttaaggtcggtaagggagttaaatcagttgttgagggtgatgtgatgg |
30505089 |
T |
|
| Q |
401 |
aagctggatcgaaagctgttgaaggtcaatcggatggactagagggacgggtgccacaagcaagagtgggtgcgttggataatgttcaggttggtgacgt |
500 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
30505090 |
aagctggatcgaaagctgttgaaggccaatcggatggactagagggacgggtgccacaagccagagtgggtgcgttggataacgttcaggttggtgacgt |
30505189 |
T |
|
| Q |
501 |
gacggtgagcttgggtaaggggcctagtaaggagcaacagggcggtagcgggaaaagtaagttcgttaagtttgatgt |
578 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30505190 |
gacggtgagcttgggtaaggggcatagtaaggagcaacagggcggtagcgggaaaagtaagttcgttaagtttgatgt |
30505267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 1 - 578
Target Start/End: Original strand, 30545033 - 30545610
Alignment:
| Q |
1 |
ggagccaccaaggccttgacgaatgcgtctctttttcgacggtttgtcacgttttattttactaattttccaccgttcttatcgaatttttatttacgaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30545033 |
ggagccaccaaggccttgacgaatgcggctctttttcgacggtatgtcacgttttattttactaattttccaccgttcttatcgaatttttatttacgaa |
30545132 |
T |
|
| Q |
101 |
aagggtttgaggtttgtggcatgctggacgaggttgtggtaccccgtaggtgcaatgttaacggggaacggtacggttttgtgagatactcgaatgtccg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
30545133 |
aagggtttgaggtttgtggcatgctggacgaggttgtggtaccccgtaggtgcaatgttaacggagaacggtacggttttgtgagatactcgaatgtccg |
30545232 |
T |
|
| Q |
201 |
agatgttagtaagttgttgaaagccgtgaatactgtttgctttggtaatttccaaattaaggcaaaagttgctaattttgacaaggcggcaactagagtg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30545233 |
ggatgttagtaagttgttgaaagccgtgaatactgtttgctttggtaatttccaaattaaggcaaaagttgctaattttgacaaggcggcagctagagtg |
30545332 |
T |
|
| Q |
301 |
gttgagaatttggtggttggcgcgggtgcgaaggataccgcgggaggaggtgttaaggttggtaagggagttaaatcagttgttgagggtgatgtgatgg |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30545333 |
gttgagaatttggtggttggcgcgggtgcgaaggataccgcgggaggaggtgttaaggtcggtaagggagttaaatcagttgttgagggtgatgtgatgg |
30545432 |
T |
|
| Q |
401 |
aagctggatcgaaagctgttgaaggtcaatcggatggactagagggacgggtgccacaagcaagagtgggtgcgttggataatgttcaggttggtgacgt |
500 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
30545433 |
aagctggatcgaaagctgttgaaggccaatcggatggactagagggacgggtgccacaagccagagtgggtgcgttggataacgttcaggttggtgacgt |
30545532 |
T |
|
| Q |
501 |
gacggtgagcttgggtaaggggcctagtaaggagcaacagggcggtagcgggaaaagtaagttcgttaagtttgatgt |
578 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30545533 |
gacggtgagcttgggtaaggggcatagtaaggagcaacagggcggtagcgggaaaagtaagttcgttaagtttgatgt |
30545610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 4e-24; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 34 - 251
Target Start/End: Complemental strand, 9872836 - 9872620
Alignment:
| Q |
34 |
tttcgacggtttgtcacgttttattttactaattttccaccgttcttatcgaatttttatttacgaaaagggtttgaggtttgtggcatgctggacgagg |
133 |
Q |
| |
|
|||||||||||||| || ||||||||||| |||||||| | || ||| ||||||||||||| ||||| |||||||| ||||| |||||||| |||| |
|
|
| T |
9872836 |
tttcgacggtttgtaactttttattttaccaattttccctcaaact-atcaaatttttatttacagaaaggttttgaggtatgtggtatgctggaagagg |
9872738 |
T |
|
| Q |
134 |
ttgtggtaccccgtaggtgcaatgttaacggggaacggtacggttttgtgagatactcgaatgtccgagatgttagtaagttgttgaaagccgtgaatac |
233 |
Q |
| |
|
| || || || ||||| | |||||||| ||||| | || ||||||||||| | || ||||| || ||||||||||| ||||||||||| |||||| |
|
|
| T |
9872737 |
tggttgttcctagtaggcgtaatgttaatggggagctctatggttttgtgaggtgttctaatgttcgtgatgttagtaaattgttgaaagcagtgaatta |
9872638 |
T |
|
| Q |
234 |
tgtttgctttggtaattt |
251 |
Q |
| |
|
||||||||||| |||||| |
|
|
| T |
9872637 |
tgtttgctttgataattt |
9872620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 58 - 123
Target Start/End: Original strand, 15176482 - 15176547
Alignment:
| Q |
58 |
tttactaattttccaccgttcttatcgaatttttatttacgaaaagggtttgaggtttgtggcatg |
123 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
15176482 |
tttactaattttccgtcgtacttatcgaatttttatttacagaaagggttagaggtttgtggcatg |
15176547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 42 - 119
Target Start/End: Complemental strand, 21554393 - 21554316
Alignment:
| Q |
42 |
gtttgtcacgttttattttactaattttccaccgttcttatcgaatttttatttacgaaaagggtttgaggtttgtgg |
119 |
Q |
| |
|
||||||||| || ||||||||||||||||| |||| ||||||||| || |||||||| |||||||| || |||||||| |
|
|
| T |
21554393 |
gtttgtcactttctattttactaattttccgccgtacttatcgaacttctatttacggaaagggttagaagtttgtgg |
21554316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 42 - 251
Target Start/End: Original strand, 28395143 - 28395352
Alignment:
| Q |
42 |
gtttgtcacgttttattttactaattttccaccgttcttatcgaatttttatttacgaaaagggtttgaggtttgtggcatgctggacgaggttgtggta |
141 |
Q |
| |
|
||||||||| || ||||||||||| ||||| ||||| |||||||| || |||||||| ||||||||||| |||||||| ||| | || || || || || |
|
|
| T |
28395143 |
gtttgtcactttctattttactaactttccgccgtttttatcgaacttctatttacggaaagggtttgaagtttgtgggatgttagaagacgtggttgtt |
28395242 |
T |
|
| Q |
142 |
ccccgtaggtgcaatgttaacggggaacggtacggttttgtgagatactcgaatgtccgagatgttagtaagttgttgaaagccgtgaatactgtttgct |
241 |
Q |
| |
|
|| |||| | ||||| | ||||| || |||||||||||||| ||||| || || || || |||| ||||||||||| || ||| |||| |||| |
|
|
| T |
28395243 |
ccggctaggcgtaatgtggatggggatgtttatggttttgtgagatattcgaacgttcgtgacgtatgtaaattgttgaaagctgttaattctgtatgct |
28395342 |
T |
|
| Q |
242 |
ttggtaattt |
251 |
Q |
| |
|
|||||||||| |
|
|
| T |
28395343 |
ttggtaattt |
28395352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 42 - 119
Target Start/End: Complemental strand, 18772905 - 18772828
Alignment:
| Q |
42 |
gtttgtcacgttttattttactaattttccaccgttcttatcgaatttttatttacgaaaagggtttgaggtttgtgg |
119 |
Q |
| |
|
||||||||| || ||||||||||| ||||| ||||| |||||||| || |||||||| |||||||| || |||||||| |
|
|
| T |
18772905 |
gtttgtcactttctattttactaactttccgccgtttttatcgaacttctatttacgtaaagggttagaagtttgtgg |
18772828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1148 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1148
Description:
Target: scaffold1148; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 140
Target Start/End: Original strand, 321 - 422
Alignment:
| Q |
39 |
acggtttgtcacgttttattttactaattttccaccgttcttatcgaatttttatttacgaaaagggtttgaggtttgtggcatgctggacgaggttgtg |
138 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||| || || || ||||||||||| || ||||| |||||||| ||||| || || || ||||| ||| |
|
|
| T |
321 |
acggtttgtcacattttattttaccaattttccgcctcaattgtcaaatttttatttgcgtaaaggatttgaggtatgtggaatactcgaggaggtggtg |
420 |
T |
|
| Q |
139 |
gt |
140 |
Q |
| |
|
|| |
|
|
| T |
421 |
gt |
422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0066 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0066
Description:
Target: scaffold0066; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 107
Target Start/End: Complemental strand, 8962 - 8897
Alignment:
| Q |
42 |
gtttgtcacgttttattttactaattttccaccgttcttatcgaatttttatttacgaaaagggtt |
107 |
Q |
| |
|
||||||||| || ||||||||||||||||| ||| |||||| || || | ||||||||||||||| |
|
|
| T |
8962 |
gtttgtcactttctattttactaattttccgtcgtacttatcaaacttctgtttacgaaaagggtt |
8897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 43 - 119
Target Start/End: Complemental strand, 9140707 - 9140631
Alignment:
| Q |
43 |
tttgtcacgttttattttactaattttccaccgttcttatcgaatttttatttacgaaaagggtttgaggtttgtgg |
119 |
Q |
| |
|
||||| ||||| |||||||| |||||||| || || ||||| ||||||| | | || |||||||||||||| ||||| |
|
|
| T |
9140707 |
tttgttacgttctattttaccaattttccgccttttttatccaatttttctctgcgtaaagggtttgaggtctgtgg |
9140631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University