View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8589_low_2 (Length: 513)
Name: NF8589_low_2
Description: NF8589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8589_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 1 - 508
Target Start/End: Complemental strand, 7108772 - 7108253
Alignment:
| Q |
1 |
ttcattgtaagagaggggtgaggcaggaatactgtatctatctctcctctccttttatgttttgccaaagaggtgatgagcagaagtatttctagattgg |
100 |
Q |
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| T |
7108772 |
ttcattgtaagagaggggtgaggcaggaatactgtatct----ctcctctccttttatgttttgccaaagaggtgatgagcagaggtatttctagattgg |
7108677 |
T |
|
| Q |
101 |
tggatgaaggtaagctagaccttatcaaggggtccagaaaaccata----------------gtaatctcattgattcaaggaatactgatacacaattt |
184 |
Q |
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| T |
7108676 |
tggatgaaggtaagctagaccttatcaaggggtccagaaaaccatatgtccagaaaaccatagtaatctcattgattcaaggaatactgatacacaattt |
7108577 |
T |
|
| Q |
185 |
gttcttatatggtttgccattttcattgttaaaagatttggagagaagcattaggaacttcatttggagtggggacattgagaagaggaaattagtcatt |
284 |
Q |
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|| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7108576 |
gtccttatatgctttgctattttcattgttaaaagatttggagagaagcattaggaacttcatttggagtggggacattgagaagaggaaattagtcatt |
7108477 |
T |
|
| Q |
285 |
gtggcatggaaaaaatttgtaagccattagaggagggagggttaggtattagatatctaatccatcttaatgaagcttataatcttaagctttgttgaga |
384 |
Q |
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|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
7108476 |
gtggcatgaaaaaaatttgtaagccattagaggaaggagggttaggtattagatatctaatccatcttaatgaagcttataatcttaagctttgttggga |
7108377 |
T |
|
| Q |
385 |
gaatggcgtcttctgatacggatcgggcaaagatgttaaggtctagagttttaaaaaacgatagatgtatttcttatcatattttctcctctttatcgag |
484 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
7108376 |
gaatggcgtcttctgatacggattgggcaaagatgttaaggtctagagttttaaaaaatgatagatgtatttcttatcatattttctcctctttatcgag |
7108277 |
T |
|
| Q |
485 |
tagttttaaaagtgagtataatct |
508 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
7108276 |
tagttttaaaagtgagtataatct |
7108253 |
T |
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