View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8589_low_3 (Length: 380)
Name: NF8589_low_3
Description: NF8589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8589_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 15 - 359
Target Start/End: Complemental strand, 40660809 - 40660469
Alignment:
| Q |
15 |
acatcacagaagaaataggaagtaat-gaaaaggcagcagccataaccaagatcaacatcttagagatataggagttatagattacgcgctagtttttta |
113 |
Q |
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| T |
40660809 |
acatcacagaagaaataggaagcaatagaaaaggcagcagccataaccaagatcaacatcttagagatataggagttatagattacgcgctagtttttta |
40660710 |
T |
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| Q |
114 |
ctactacctccggtttgttatacaatagacatcatgtacatttgttatgattgcaattaagcatgaagcacatgttaatgaggccagtctgctacttttt |
213 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40660709 |
ctactacctccggttttttatacaatagacatcatgtacatttgttatgattgcaattaagcatgaagcacatgttaatgaggccagtctgctacttttt |
40660610 |
T |
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| Q |
214 |
gtctacttgattgtggttgtctttgttatttgatttcgagcaagttactcaaggggaaatagaagtgcagattattctggatttagctcaatatttggtt |
313 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40660609 |
gtccacttgattgtggttgtctttgttatttgatttcgagcaagttactcaaggggaaatagaagtgcagattattctggatttagctcaatatttggtt |
40660510 |
T |
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| Q |
314 |
tggtttggtttggtgctgtctaagtggaaacagcaccttggcacag |
359 |
Q |
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||||| |||||||||||||||||||||||||||||||||||| |
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| T |
40660509 |
tggtt-----tggtgctgtctaagtggaaacagcaccttggcacag |
40660469 |
T |
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