View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8589_low_6 (Length: 263)
Name: NF8589_low_6
Description: NF8589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8589_low_6 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 16 - 263
Target Start/End: Complemental strand, 35842081 - 35841834
Alignment:
| Q |
16 |
acatcacctacagaagaacttccataacaggacttgccattatcaagatctccacctctctgactgtctttacaatcggtagcaattgttgggtgcagaa |
115 |
Q |
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| T |
35842081 |
acatcacctacagaagaacttccataacaggacttgccattatcaagatctccacctctctgactgtctttacaatcggtagcaattgttgggtgcagaa |
35841982 |
T |
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| Q |
116 |
catttgattcttctgaaggctttagatcttcatcatctgctgttgtttcctgatagggagacaaatccatcggagaaaagccaccagaagattcaggggt |
215 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35841981 |
catttgattcttctgaagcctttagatcttcatcatctgctgttgtttcctgatagggagacaaatccatcggagaaaagccaccagaagattcaggggt |
35841882 |
T |
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| Q |
216 |
ttcaagtgaactgttttcttttggcaaatgatctagccttgtctgttt |
263 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
35841881 |
ttcaagcgaactgttttcttttggcaaatgatctagccttgtctgttt |
35841834 |
T |
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