View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8589_low_7 (Length: 246)

Name: NF8589_low_7
Description: NF8589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8589_low_7
NF8589_low_7
[»] chr6 (32 HSPs)
chr6 (46-234)||(28297199-28297387)
chr6 (46-234)||(28514686-28514874)
chr6 (48-233)||(28243332-28243517)
chr6 (46-234)||(28185928-28186116)
chr6 (46-234)||(28227488-28227675)
chr6 (59-234)||(28181665-28181840)
chr6 (49-232)||(28326016-28326199)
chr6 (78-234)||(28235132-28235288)
chr6 (87-177)||(26623847-26623937)
chr6 (87-177)||(26729824-26729914)
chr6 (54-177)||(28097959-28098082)
chr6 (87-177)||(26656541-26656631)
chr6 (87-177)||(26762512-26762602)
chr6 (88-177)||(29826560-29826649)
chr6 (101-181)||(31288895-31288975)
chr6 (82-177)||(27698102-27698197)
chr6 (87-177)||(25539119-25539209)
chr6 (87-177)||(26803022-26803112)
chr6 (87-177)||(31285135-31285225)
chr6 (88-177)||(26849289-26849378)
chr6 (128-181)||(26959743-26959796)
chr6 (87-147)||(26647055-26647115)
chr6 (87-147)||(26753023-26753083)
chr6 (87-177)||(26143444-26143534)
chr6 (87-177)||(27610636-27610726)
chr6 (87-177)||(27718015-27718105)
chr6 (91-148)||(25511518-25511575)
chr6 (87-148)||(25580298-25580359)
chr6 (87-140)||(27427165-27427218)
chr6 (87-143)||(25483635-25483691)
chr6 (128-176)||(26893105-26893153)
chr6 (130-230)||(28150495-28150595)
[»] scaffold0038 (4 HSPs)
scaffold0038 (48-233)||(43494-43679)
scaffold0038 (46-234)||(27986-28173)
scaffold0038 (78-234)||(35294-35450)
scaffold0038 (49-188)||(117331-117470)
[»] scaffold0019 (1 HSPs)
scaffold0019 (48-234)||(57753-57940)
[»] chr4 (6 HSPs)
chr4 (46-177)||(5090469-5090600)
chr4 (87-145)||(18731048-18731106)
chr4 (87-145)||(18655021-18655079)
chr4 (87-177)||(18698912-18699002)
chr4 (87-145)||(18723629-18723687)
chr4 (87-140)||(18074337-18074390)
[»] chr2 (1 HSPs)
chr2 (71-229)||(3280219-3280377)
[»] chr1 (3 HSPs)
chr1 (87-177)||(267856-267946)
chr1 (87-148)||(28127220-28127281)
chr1 (131-187)||(26136508-26136564)
[»] scaffold0349 (1 HSPs)
scaffold0349 (87-177)||(3055-3145)
[»] scaffold0003 (1 HSPs)
scaffold0003 (87-140)||(60145-60198)
[»] chr8 (1 HSPs)
chr8 (85-177)||(31905625-31905717)


Alignment Details
Target: chr6 (Bit Score: 133; Significance: 3e-69; HSPs: 32)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 46 - 234
Target Start/End: Complemental strand, 28297387 - 28297199
Alignment:
Q  46 tgtgatgcatttactcaatcttttttgattgggtaggagtggatatgaatacgagtttattgagaagatagtcaaatatgtatccaacaagatcaatcgt 145  Q
    |||||||||||||||||| ||| ||||||||| ||||| |||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||    
T  28297387 tgtgatgcatttactcaaacttatttgattggataggaatggatatgaatatgagtttattgagaagatagtcaaatacgtatccagcaagatcaatcgt 28297288  T
Q  146 gttcctttatatgttgctgattaccctgttggtctcgagtctagggtcctaaaagtaaattcatttttggatgttggatctaatggtga 234  Q
    ||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||| ||||| |  |||||||||||||    
T  28297287 gttcctttatatgttgccgattaccccgttggtctccagtctagggtcctaaaagtaaattcatttctggatctcagatctaatggtga 28297199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 46 - 234
Target Start/End: Original strand, 28514686 - 28514874
Alignment:
Q  46 tgtgatgcatttactcaatcttttttgattgggtaggagtggatatgaatacgagtttattgagaagatagtcaaatatgtatccaacaagatcaatcgt 145  Q
    |||||||||||||||||| ||| ||||||||| ||||| |||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||    
T  28514686 tgtgatgcatttactcaaacttatttgattggataggaatggatatgaatatgagtttattgagaagatagtcaaatacgtatccagcaagatcaatcgt 28514785  T
Q  146 gttcctttatatgttgctgattaccctgttggtctcgagtctagggtcctaaaagtaaattcatttttggatgttggatctaatggtga 234  Q
    ||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||| ||||| |  |||||||||||||    
T  28514786 gttcctttatatgttgccgattaccccgttggtctccagtctagggtcctaaaagtaaattcatttctggatctcagatctaatggtga 28514874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 48 - 233
Target Start/End: Original strand, 28243332 - 28243517
Alignment:
Q  48 tgatgcatttactcaatcttttttgattgggtaggagtggatatgaatacgagtttattgagaagatagtcaaatatgtatccaacaagatcaatcgtgt 147  Q
    |||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||| ||| |||||||||||    
T  28243332 tgatgcatttactcaaacttatttgattgggtaggaatggatatgaatacgagtttattgagaagatagtaaaatatttatccagcaaaatcaatcgtgt 28243431  T
Q  148 tcctttatatgttgctgattaccctgttggtctcgagtctagggtcctaaaagtaaattcatttttggatgttggatctaatggtg 233  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| | ||||| ||||||| |||||    
T  28243432 tcctctatatgttgctgattaccctgttggtctcgagtctagggtcctaaaagtaaataaatttcttgatgtcggatctactggtg 28243517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 46 - 234
Target Start/End: Original strand, 28185928 - 28186116
Alignment:
Q  46 tgtgatgcatttactcaatcttttttgattgggtaggagtggatatgaatacgagtttattgagaagatagtcaaatatgtatccaacaagatcaatcgt 145  Q
    ||||||||| ||| |||| ||| ||| ||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |    
T  28185928 tgtgatgcacttaatcaaacttattttattgggtaggaatggctatgaacacgagtttattgagaagatagtcaaatatgtatctaacaagatcaatcat 28186027  T
Q  146 gttcctttatatgttgctgattaccctgttggtctcgagtctagggtcctaaaagtaaattcatttttggatgttggatctaatggtga 234  Q
    |||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||| || ||||| ||||||||||||||||    
T  28186028 gttcctttatatgttgctgatttccctgttggtatcgagtctagggttctaaaagtaaattcacttatggattttggatctaatggtga 28186116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 46 - 234
Target Start/End: Original strand, 28227488 - 28227675
Alignment:
Q  46 tgtgatgcatttactcaatcttttttgattgggtaggagtggatatgaatacgagtttattgagaagatagtcaaatatgtatccaacaagatcaatcgt 145  Q
    ||||||||||||||||||  || ||||||||||||||| ||| ||||||| ||||||||| |||||||||||||||||| |||| ||||||||||||| |    
T  28227488 tgtgatgcatttactcaaa-ttatttgattgggtaggaatggctatgaatgcgagtttatcgagaagatagtcaaatatatatctaacaagatcaatcat 28227586  T
Q  146 gttcctttatatgttgctgattaccctgttggtctcgagtctagggtcctaaaagtaaattcatttttggatgttggatctaatggtga 234  Q
    ||||||||| ||||||| ||||||||||||||| | || |||||||||||||||||||||||| || ||||||||||||||||||||||    
T  28227587 gttcctttacatgttgccgattaccctgttggtgttgaatctagggtcctaaaagtaaattcacttatggatgttggatctaatggtga 28227675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 59 - 234
Target Start/End: Original strand, 28181665 - 28181840
Alignment:
Q  59 ctcaatcttttttgattgggtaggagtggatatgaatacgagtttattgagaagatagtcaaatatgtatccaacaagatcaatcgtgttcctttatatg 158  Q
    ||||| ||| ||||||||||||||| |||||||||||| |||||||| || |||||||||||||| || ||||| ||||||||| |||||||||||||||    
T  28181665 ctcaaacttatttgattgggtaggaatggatatgaatatgagtttatcgaaaagatagtcaaatacgtttccaaaaagatcaattgtgttcctttatatg 28181764  T
Q  159 ttgctgattaccctgttggtctcgagtctagggtcctaaaagtaaattcatttttggatgttggatctaatggtga 234  Q
    |||| ||||||  |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  28181765 ttgccgattactatgttggtctcgagtctagggtcctaaaagtaaattcatttctggatgtcggatctaatggtga 28181840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 49 - 232
Target Start/End: Original strand, 28326016 - 28326199
Alignment:
Q  49 gatgcatttactcaatcttttttgattgggtaggagtggatatgaatacgagtttattgagaagatagtcaaatatgtatccaacaagatcaatcgtgtt 148  Q
    ||||||||||||||| ||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||| ||  ||||||| | |||||    
T  28326016 gatgcatttactcaaacttatttgattgggtaggaatggctatgaatacgagtttattgagaagatagtcaaatacgtattcaggaagatcagttgtgtt 28326115  T
Q  149 cctttatatgttgctgattaccctgttggtctcgagtctagggtcctaaaagtaaattcatttttggatgttggatctaatggt 232  Q
    |||||||||||||| ||||||||||| ||||||||||||||| ||||| ||||||||||| || | ||||||||||||||||||    
T  28326116 cctttatatgttgcggattaccctgtaggtctcgagtctaggatcctagaagtaaattcacttatagatgttggatctaatggt 28326199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 78 - 234
Target Start/End: Original strand, 28235132 - 28235288
Alignment:
Q  78 gtaggagtggatatgaatacgagtttattgagaagatagtcaaatatgtatccaacaagatcaatcgtgttcctttatatgttgctgattaccctgttgg 177  Q
    |||||| ||||||||||||| ||| |||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||    
T  28235132 gtaggaatggatatgaatacaagtatattaagaagatagtcaaatatgtatcaaacaagatcaatcatgttcctttatatgttgccgattaccctgttgg 28235231  T
Q  178 tctcgagtctagggtcctaaaagtaaattcatttttggatgttggatctaatggtga 234  Q
    |||| ||||||||||||||||||||| ||||| | ||||||||||||||||||||||    
T  28235232 tctcaagtctagggtcctaaaagtaacttcatgtgtggatgttggatctaatggtga 28235288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 87 - 177
Target Start/End: Original strand, 26623847 - 26623937
Alignment:
Q  87 gatatgaatacgagtttattgagaagatagtcaaatatgtatccaacaagatcaatcgtgttcctttatatgttgctgattaccctgttgg 177  Q
    |||||||||| || |||||||| ||||||||||||||  | |||||||||||||||||||| || ||| |||||||| | |||||||||||    
T  26623847 gatatgaatatgattttattgaaaagatagtcaaatacatctccaacaagatcaatcgtgtgcccttacatgttgctaaataccctgttgg 26623937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 87 - 177
Target Start/End: Original strand, 26729824 - 26729914
Alignment:
Q  87 gatatgaatacgagtttattgagaagatagtcaaatatgtatccaacaagatcaatcgtgttcctttatatgttgctgattaccctgttgg 177  Q
    |||||||||| || |||||||| ||||||||||||||  | |||||||||||||||||||| || ||| |||||||| | |||||||||||    
T  26729824 gatatgaatatgattttattgaaaagatagtcaaatacatctccaacaagatcaatcgtgtgcccttacatgttgctaaataccctgttgg 26729914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 54 - 177
Target Start/End: Complemental strand, 28098082 - 28097959
Alignment:
Q  54 atttactcaatcttttttgattgggtaggagtggatatgaatacgagtttattgagaagatagtcaaatatgtatccaacaagatcaatcgtgttccttt 153  Q
    |||||||||| ||| | | |||||  |||| ||||||||||| ||||||||||  | | |||||||||||||||||||||||  | |||| ||| | |||    
T  28098082 atttactcaaacttatcttattggccaggaatggatatgaattcgagtttattcgggaaatagtcaaatatgtatccaacaaattgaatcatgtcctttt 28097983  T
Q  154 atatgttgctgattaccctgttgg 177  Q
    | |||||| ||||||||| |||||    
T  28097982 acatgttgttgattaccccgttgg 28097959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 87 - 177
Target Start/End: Original strand, 26656541 - 26656631
Alignment:
Q  87 gatatgaatacgagtttattgagaagatagtcaaatatgtatccaacaagatcaatcgtgttcctttatatgttgctgattaccctgttgg 177  Q
    ||||||||||| ||||||||||||| ||||||||| |  | ||| |||||||||||||||||  |||| |||||||  | |||||||||||    
T  26656541 gatatgaatacaagtttattgagaatatagtcaaagacatctccgacaagatcaatcgtgtttttttacatgttgccaaataccctgttgg 26656631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 87 - 177
Target Start/End: Original strand, 26762512 - 26762602
Alignment:
Q  87 gatatgaatacgagtttattgagaagatagtcaaatatgtatccaacaagatcaatcgtgttcctttatatgttgctgattaccctgttgg 177  Q
    ||||||||||| ||||||||||||| ||||||||| |  | ||| |||||||||||||||||  |||| |||||||  | |||||||||||    
T  26762512 gatatgaatacaagtttattgagaatatagtcaaagacatctccgacaagatcaatcgtgtttttttacatgttgccaaataccctgttgg 26762602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 88 - 177
Target Start/End: Original strand, 29826560 - 29826649
Alignment:
Q  88 atatgaatacgagtttattgagaagatagtcaaatatgtatccaacaagatcaatcgtgttcctttatatgttgctgattaccctgttgg 177  Q
    |||||||||||||||||||| ||||||||||||| | || ||||||||||   | ||||| ||| |  ||||||| ||||||||||||||    
T  29826560 atatgaatacgagtttattgtgaagatagtcaaagaagtttccaacaagactgagcgtgtccctcttcatgttgcggattaccctgttgg 29826649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 101 - 181
Target Start/End: Original strand, 31288895 - 31288975
Alignment:
Q  101 tttattgagaagatagtcaaatatgtatccaacaagatcaatcgtgttcctttatatgttgctgattaccctgttggtctc 181  Q
    |||||||| || ||||| | | |||| ||||||||||| || | |||||||||| ||||||||||||||| ||||||||||    
T  31288895 tttattgaaaaaatagttacagatgtctccaacaagattaaccatgttcctttacatgttgctgattaccttgttggtctc 31288975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 177
Target Start/End: Complemental strand, 27698197 - 27698102
Alignment:
Q  82 gagtggatatgaatacgagtttattgagaagatagtcaaatatgtatccaacaagatcaatcgtgttcctttatatgttgctgattaccctgttgg 177  Q
    |||| ||||||||||| ||||||||||  |||||||||||||  | ||||||||||||| ||||   || ||| |||||||  |||||||||||||    
T  27698197 gagtagatatgaatacaagtttattgaagagatagtcaaatacatctccaacaagatcagtcgtcagcccttacatgttgccaattaccctgttgg 27698102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 87 - 177
Target Start/End: Original strand, 25539119 - 25539209
Alignment:
Q  87 gatatgaatacgagtttattgagaagatagtcaaatatgtatccaacaagatcaatcgtgttcctttatatgttgctgattaccctgttgg 177  Q
    ||||||||||| |||||||||||||||||||| || |  | |||||||| ||||||| ||||  ||||||||| ||  | |||||||||||    
T  25539119 gatatgaatacaagtttattgagaagatagtcgaagacatctccaacaatatcaatcatgtttttttatatgtggccaaataccctgttgg 25539209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 87 - 177
Target Start/End: Original strand, 26803022 - 26803112
Alignment:
Q  87 gatatgaatacgagtttattgagaagatagtcaaatatgtatccaacaagatcaatcgtgttcctttatatgttgctgattaccctgttgg 177  Q
    ||||||||||| |||| ||||   |||||||||||||  | ||||||||||||||||||   || ||| |||||||| |||||||||||||    
T  26803022 gatatgaatacaagttgattggagagatagtcaaatacatctccaacaagatcaatcgtcagcccttacatgttgctaattaccctgttgg 26803112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 87 - 177
Target Start/End: Original strand, 31285135 - 31285225
Alignment:
Q  87 gatatgaatacgagtttattgagaagatagtcaaatatgtatccaacaagatcaatcgtgttcctttatatgttgctgattaccctgttgg 177  Q
    |||||||||| || |||||||   | |||||||||||  | |||||||||||||||||||| || ||| |||||||  |||||||||||||    
T  31285135 gatatgaatatgattttattggagacatagtcaaatacatctccaacaagatcaatcgtgtgcccttacatgttgccaattaccctgttgg 31285225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 177
Target Start/End: Original strand, 26849289 - 26849378
Alignment:
Q  88 atatgaatacgagtttattgagaagatagtcaaatatgtatccaacaagatcaatcgtgttcctttatatgttgctgattaccctgttgg 177  Q
    ||||||| || | ||||||| ||| ||||| ||  |||| |||||||||||||| | |||||||||  ||||||||||||||| ||||||    
T  26849289 atatgaacaccattttattgggaaaatagttaaggatgtctccaacaagatcaaccatgttcctttgcatgttgctgattaccttgttgg 26849378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 26959743 - 26959796
Alignment:
Q  128 tccaacaagatcaatcgtgttcctttatatgttgctgattaccctgttggtctc 181  Q
    ||||||||||| || | |||||||||| ||||||||||||||| ||||||||||    
T  26959743 tccaacaagattaaccatgttcctttacatgttgctgattaccttgttggtctc 26959796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 147
Target Start/End: Original strand, 26647055 - 26647115
Alignment:
Q  87 gatatgaatacgagtttattgagaagatagtcaaatatgtatccaacaagatcaatcgtgt 147  Q
    ||||||||||| ||||||||| |||||||||| || |  | ||||||||||||||||||||    
T  26647055 gatatgaatacaagtttattgggaagatagtcgaagacatctccaacaagatcaatcgtgt 26647115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 147
Target Start/End: Original strand, 26753023 - 26753083
Alignment:
Q  87 gatatgaatacgagtttattgagaagatagtcaaatatgtatccaacaagatcaatcgtgt 147  Q
    ||||||||||| ||||||||| |||||||||| || |  | ||||||||||||||||||||    
T  26753023 gatatgaatacaagtttattgggaagatagtcgaagacatctccaacaagatcaatcgtgt 26753083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 177
Target Start/End: Original strand, 26143444 - 26143534
Alignment:
Q  87 gatatgaatacgagtttattgagaagatagtcaaatatgtatccaacaagatcaatcgtgttcctttatatgttgctgattaccctgttgg 177  Q
    ||||||||||| |||||||||||||||||||| || |  | |||||||| ||||||| ||||  |||| |||| ||  | |||||||||||    
T  26143444 gatatgaatacaagtttattgagaagatagtcgaagacatctccaacaatatcaatcatgtttttttaaatgtagccaaataccctgttgg 26143534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 177
Target Start/End: Complemental strand, 27610726 - 27610636
Alignment:
Q  87 gatatgaatacgagtttattgagaagatagtcaaatatgtatccaacaagatcaatcgtgttcctttatatgttgctgattaccctgttgg 177  Q
    |||||||||||||||||| ||   |||||||||||||  | ||||||||||||| ||||   || ||| |||||||  |||||||||||||    
T  27610726 gatatgaatacgagtttactggagagatagtcaaatacatctccaacaagatcagtcgtcaacccttacatgttgccaattaccctgttgg 27610636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 177
Target Start/End: Complemental strand, 27718105 - 27718015
Alignment:
Q  87 gatatgaatacgagtttattgagaagatagtcaaatatgtatccaacaagatcaatcgtgttcctttatatgttgctgattaccctgttgg 177  Q
    |||||||||||||||||||||   |||||||||||||  | |||||||||| || ||||   || ||| |||||||  |||||||||||||    
T  27718105 gatatgaatacgagtttattggagagatagtcaaatacatctccaacaagaccagtcgtcaacccttacatgttgccaattaccctgttgg 27718015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 148
Target Start/End: Original strand, 25511518 - 25511575
Alignment:
Q  91 tgaatacgagtttattgagaagatagtcaaatatgtatccaacaagatcaatcgtgtt 148  Q
    ||||||| |||||||||||||||||||| || |  | |||||||||||||||| ||||    
T  25511518 tgaatacaagtttattgagaagatagtcgaagacatctccaacaagatcaatcatgtt 25511575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 148
Target Start/End: Original strand, 25580298 - 25580359
Alignment:
Q  87 gatatgaatacgagtttattgagaagatagtcaaatatgtatccaacaagatcaatcgtgtt 148  Q
    ||||||||||| |||||||||||||||||||| || |  | |||||||| ||||||| ||||    
T  25580298 gatatgaatacaagtttattgagaagatagtcgaagacatctccaacaatatcaatcatgtt 25580359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 140
Target Start/End: Complemental strand, 27427218 - 27427165
Alignment:
Q  87 gatatgaatacgagtttattgagaagatagtcaaatatgtatccaacaagatca 140  Q
    |||||||||||||| ||||||  ||||||||||||||  | |||||||||||||    
T  27427218 gatatgaatacgagcttattggaaagatagtcaaatacatctccaacaagatca 27427165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 143
Target Start/End: Original strand, 25483635 - 25483691
Alignment:
Q  87 gatatgaatacgagtttattgagaagatagtcaaatatgtatccaacaagatcaatc 143  Q
    |||||||| || |||||||||||||||||||| ||||  | |||||||| |||||||    
T  25483635 gatatgaacacaagtttattgagaagatagtccaatacatctccaacaatatcaatc 25483691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 176
Target Start/End: Complemental strand, 26893153 - 26893105
Alignment:
Q  128 tccaacaagatcaatcgtgttcctttatatgttgctgattaccctgttg 176  Q
    |||||||||||||||| |  || |||||||||| |||||||||||||||    
T  26893153 tccaacaagatcaatccttctcttttatatgttcctgattaccctgttg 26893105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 230
Target Start/End: Original strand, 28150495 - 28150595
Alignment:
Q  130 caacaagatcaatcgtgttcctttatatgttgctgattaccctgttggtctcgagtctagggtcctaaaagtaaattcatttttggatgttggatctaat 229  Q
    ||||||||| | |||||| |||||| |||||| ||||||||||||||| ||  ||| | | |||| || |||||||||| || | | |||||||| ||||    
T  28150495 caacaagattagtcgtgtccctttacatgttgttgattaccctgttggcctgcagtgtcgagtcccaatagtaaattcacttctagctgttggatttaat 28150594  T
Q  230 g 230  Q
    |    
T  28150595 g 28150595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 130; Significance: 2e-67; HSPs: 4)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 48 - 233
Target Start/End: Original strand, 43494 - 43679
Alignment:
Q  48 tgatgcatttactcaatcttttttgattgggtaggagtggatatgaatacgagtttattgagaagatagtcaaatatgtatccaacaagatcaatcgtgt 147  Q
    |||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||| ||| |||||||||||    
T  43494 tgatgcatttactcaaacttatttgattgggtaggaatggatatgaatacgagtttattgagaagatagtaaaatatttatccagcaaaatcaatcgtgt 43593  T
Q  148 tcctttatatgttgctgattaccctgttggtctcgagtctagggtcctaaaagtaaattcatttttggatgttggatctaatggtg 233  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| | ||||| ||||||| |||||    
T  43594 tcctctatatgttgctgattaccctgttggtctcgagtctagggtcctaaaagtaaataaatttcttgatgtcggatctactggtg 43679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 46 - 234
Target Start/End: Original strand, 27986 - 28173
Alignment:
Q  46 tgtgatgcatttactcaatcttttttgattgggtaggagtggatatgaatacgagtttattgagaagatagtcaaatatgtatccaacaagatcaatcgt 145  Q
    ||||||||||||||||||  || ||||||||||||||| ||| ||||||| ||||||||| |||||||||||||||||| |||| ||||||||||||| |    
T  27986 tgtgatgcatttactcaaa-ttatttgattgggtaggaatggctatgaatgcgagtttatcgagaagatagtcaaatatatatctaacaagatcaatcat 28084  T
Q  146 gttcctttatatgttgctgattaccctgttggtctcgagtctagggtcctaaaagtaaattcatttttggatgttggatctaatggtga 234  Q
    ||||||||| ||||||| ||||||||||||||| | || |||||||||||||||||||||||| || ||||||||||||||||||||||    
T  28085 gttcctttacatgttgccgattaccctgttggtgttgaatctagggtcctaaaagtaaattcacttatggatgttggatctaatggtga 28173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 78 - 234
Target Start/End: Original strand, 35294 - 35450
Alignment:
Q  78 gtaggagtggatatgaatacgagtttattgagaagatagtcaaatatgtatccaacaagatcaatcgtgttcctttatatgttgctgattaccctgttgg 177  Q
    |||||| ||||||||||||| ||| |||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||    
T  35294 gtaggaatggatatgaatacaagtatattaagaagatagtcaaatatgtatcaaacaagatcaatcatgttcctttatatgttgccgattaccctgttgg 35393  T
Q  178 tctcgagtctagggtcctaaaagtaaattcatttttggatgttggatctaatggtga 234  Q
    |||| ||||||||||||||||||||| ||||| | ||||||||||||||||||||||    
T  35394 tctcaagtctagggtcctaaaagtaacttcatgtgtggatgttggatctaatggtga 35450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #4
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 49 - 188
Target Start/End: Original strand, 117331 - 117470
Alignment:
Q  49 gatgcatttactcaatcttttttgattgggtaggagtggatatgaatacgagtttattgagaagatagtcaaatatgtatccaacaagatcaatcgtgtt 148  Q
    ||||||||||||||| ||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||| ||  ||||||| | |||||    
T  117331 gatgcatttactcaaacttatttgattgggtaggaatggctatgaatacgagtttattgagaagatagtcaaatacgtattcaggaagatcagttgtgtt 117430  T
Q  149 cctttatatgttgctgattaccctgttggtctcgagtcta 188  Q
    |||||||||||||| ||||||||||| |||||||||||||    
T  117431 cctttatatgttgcggattaccctgtaggtctcgagtcta 117470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 48 - 234
Target Start/End: Complemental strand, 57940 - 57753
Alignment:
Q  48 tgatgcatttactcaatcttttttgatt-gggtaggagtggatatgaatacgagtttattgagaagatagtcaaatatgtatccaacaagatcaatcgtg 146  Q
    |||||||||||||||| ||| ||| ||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||    
T  57940 tgatgcatttactcaaacttatttcatttgggtaggaatggatatgaatgcgagtttattgagaagatagtcaaatatgtatctaacaagatcaatcatg 57841  T
Q  147 ttcctttatatgttgctgattaccctgttggtctcgagtctagggtcctaaaagtaaattcatttttggatgttggatctaatggtga 234  Q
    |||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||| || |||||||| |||||||||||||    
T  57840 ttcctttatatgttgccgattaccctgttggtatcgaatctagggtcctaaaagtaaattcacttctggatgttagatctaatggtga 57753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 46 - 177
Target Start/End: Complemental strand, 5090600 - 5090469
Alignment:
Q  46 tgtgatgcatttactcaatcttttttgattgggtaggagtggatatgaatacgagtttattgagaagatagtcaaatatgtatccaacaagatcaatcgt 145  Q
    ||||||||||||| ||||  || | ||||| | ||||| |||||||||||||||||||||| ||| |||||||| |||||| ||||||||||||||||      
T  5090600 tgtgatgcatttattcaaatttatctgatttgataggactggatatgaatacgagtttattcagatgatagtcacatatgtctccaacaagatcaatcac 5090501  T
Q  146 gttcctttatatgttgctgattaccctgttgg 177  Q
      ||||||| |||||||||||||||| |||||    
T  5090500 actcctttacatgttgctgattacccggttgg 5090469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 87 - 145
Target Start/End: Complemental strand, 18731106 - 18731048
Alignment:
Q  87 gatatgaatacgagtttattgagaagatagtcaaatatgtatccaacaagatcaatcgt 145  Q
    ||||||||||| |||||||||| ||||||||||||||||| ||||||||||||| ||||    
T  18731106 gatatgaatacaagtttattgaaaagatagtcaaatatgtctccaacaagatcagtcgt 18731048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 87 - 145
Target Start/End: Complemental strand, 18655079 - 18655021
Alignment:
Q  87 gatatgaatacgagtttattgagaagatagtcaaatatgtatccaacaagatcaatcgt 145  Q
    ||||||||||| |||||||||  ||||||||||||||||| ||||||||||||| ||||    
T  18655079 gatatgaatacaagtttattggaaagatagtcaaatatgtctccaacaagatcagtcgt 18655021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 177
Target Start/End: Complemental strand, 18699002 - 18698912
Alignment:
Q  87 gatatgaatacgagtttattgagaagatagtcaaatatgtatccaacaagatcaatcgtgttcctttatatgttgctgattaccctgttgg 177  Q
    ||||||||||| |||||||||   | ||||||||||| || ||||||||||||| ||||   || ||| |||||||  |||||||||||||    
T  18699002 gatatgaatacaagtttattggagatatagtcaaatacgtctccaacaagatcagtcgtcagcccttacatgttgccaattaccctgttgg 18698912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 145
Target Start/End: Complemental strand, 18723687 - 18723629
Alignment:
Q  87 gatatgaatacgagtttattgagaagatagtcaaatatgtatccaacaagatcaatcgt 145  Q
    ||||||||||| |||||||||  |||||||||||||||||   ||||||||||| ||||    
T  18723687 gatatgaatacaagtttattggaaagatagtcaaatatgtcaacaacaagatcagtcgt 18723629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 140
Target Start/End: Original strand, 18074337 - 18074390
Alignment:
Q  87 gatatgaatacgagtttattgagaagatagtcaaatatgtatccaacaagatca 140  Q
    |||||||||||||| ||||||  ||||||||||||||  | |||||||||||||    
T  18074337 gatatgaatacgagcttattggaaagatagtcaaatacatctccaacaagatca 18074390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 71 - 229
Target Start/End: Original strand, 3280219 - 3280377
Alignment:
Q  71 tgattgggtaggagtggatatgaatacgagtttattgagaagatagtcaaatatgtatccaacaagatcaatcgtgttcctttatatgttgctgattacc 170  Q
    |||||||| |||| || |||| ||||| ||||||| | | | ||||||||| |||||||||||||||| ||||||| ||||||| ||||||  |||||||    
T  3280219 tgattgggcaggaatgaatatcaatacaagtttataggggatatagtcaaaaatgtatccaacaagataaatcgtgctcctttacatgttgtcgattacc 3280318  T
Q  171 ctgttggtctcgagtctagggtcctaaaagtaaattcatttttggatgttggatctaat 229  Q
    | |||||  |  ||||| | ||||| |||||||||||| || | || |||| |||||||    
T  3280319 cggttggcatgcagtctcgagtccttaaagtaaattcacttctagaagttgcatctaat 3280377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 87 - 177
Target Start/End: Complemental strand, 267946 - 267856
Alignment:
Q  87 gatatgaatacgagtttattgagaagatagtcaaatatgtatccaacaagatcaatcgtgttcctttatatgttgctgattaccctgttgg 177  Q
    ||||||||||| |||||||||   |||||||||||||  | ||||||||||||| |||||  || ||| |||||||  |||||||||||||    
T  267946 gatatgaatacaagtttattggagagatagtcaaatacatctccaacaagatcagtcgtgagcccttacatgttgccaattaccctgttgg 267856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 148
Target Start/End: Complemental strand, 28127281 - 28127220
Alignment:
Q  87 gatatgaatacgagtttattgagaagatagtcaaatatgtatccaacaagatcaatcgtgtt 148  Q
    ||||||||||| |||||||| |||||||| ||||| |  ||||| ||| |||||||||||||    
T  28127281 gatatgaatacaagtttattcagaagataatcaaagacatatccgacaggatcaatcgtgtt 28127220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 187
Target Start/End: Original strand, 26136508 - 26136564
Alignment:
Q  131 aacaagatcaatcgtgttcctttatatgttgctgattaccctgttggtctcgagtct 187  Q
    ||||||||||| ||||||| |||| ||||||| ||| |||| ||||| |||||||||    
T  26136508 aacaagatcaaccgtgttcttttacatgttgccgatcaccccgttgggctcgagtct 26136564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 177
Target Start/End: Complemental strand, 3145 - 3055
Alignment:
Q  87 gatatgaatacgagtttattgagaagatagtcaaatatgtatccaacaagatcaatcgtgttcctttatatgttgctgattaccctgttgg 177  Q
    |||||||||||||||||||||   |||||||||||||  | |||||||||| || ||||   || ||| |||||||  |||||||||||||    
T  3145 gatatgaatacgagtttattggagagatagtcaaatacatctccaacaagaccagtcgtcaacccttacatgttgccaattaccctgttgg 3055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 140
Target Start/End: Original strand, 60145 - 60198
Alignment:
Q  87 gatatgaatacgagtttattgagaagatagtcaaatatgtatccaacaagatca 140  Q
    |||||||||||||| ||||||  ||||||||||||||  | |||||||||||||    
T  60145 gatatgaatacgagcttattggaaagatagtcaaatacatctccaacaagatca 60198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 177
Target Start/End: Original strand, 31905625 - 31905717
Alignment:
Q  85 tggatatgaatacgagtttattgagaagatagtcaaatatgtatccaacaagatcaatcgtgttcctttatatgttgctgattaccctgttgg 177  Q
    ||||||||| |||||||||||||  ||||| ||  || |||| ||||| ||||| ||||||||| |||||   |||||||| ||||| |||||    
T  31905625 tggatatgagtacgagtttattggaaagattgttgaacatgtttccaagaagatgaatcgtgttgctttacccgttgctgactacccagttgg 31905717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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