View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8590_high_10 (Length: 355)
Name: NF8590_high_10
Description: NF8590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8590_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 62 - 282
Target Start/End: Original strand, 5023036 - 5023257
Alignment:
| Q |
62 |
ataggacagtagacttccatctccatcagccaacatatatatattgaaactattacaatattcattatagacnnnnnnnn-gtgttttagtttcatgtag |
160 |
Q |
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| T |
5023036 |
ataggacagtagacttccatctccatcagccaacatatatatattgaaactattacaatattcattatagactttttttttgtgttttaggttcatgtag |
5023135 |
T |
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| Q |
161 |
gttgtgaaatgaacataatctaattctattgcaatgttgtttgaacagtatcaagggctatggtcctacaatgatactttctttccacactcttgtgctt |
260 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5023136 |
gttgtgaaatgaacataatctaatgctattgcaatgttgtttgaacagtagaaagggctatggtcctacaatgatactttctttccacactcttgtgctt |
5023235 |
T |
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| Q |
261 |
aacgttgattgaattttactct |
282 |
Q |
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|||||||||||||||||||||| |
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| T |
5023236 |
aacgttgattgaattttactct |
5023257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 5022588 - 5022639
Alignment:
| Q |
14 |
attattcttagattagaaaaccaattaaaggaaaatgtaacttgaaacatag |
65 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5022588 |
attattcttagattagaaaaccaattaaaggaaaatgtaacttgaaacatag |
5022639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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