View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8590_high_21 (Length: 240)
Name: NF8590_high_21
Description: NF8590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8590_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 56346266 - 56346039
Alignment:
| Q |
1 |
taaacattgtattcccagcaataagatcatcggatgagaccactgtggatccatcatctataactgggctatttgacggctttgaattcaagctgaaacc |
100 |
Q |
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| T |
56346266 |
taaacattgtattcccagcaataagatcatcggatgagaccactgtggatccatcatctataactgggctatttgacggctttgaattcaagctgaaacc |
56346167 |
T |
|
| Q |
101 |
atcaatttgaagcctggaactgccgtttactgatttttggtaggaagcagggggtgttgacttttgaggcatatattggaggtctaacttgtgcttgaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56346166 |
atcaatttgaagcctggaactgccgtttactgatttttggtaggaagcagggggtgttgacttttgaggcatatattggaggtctaacttgtgcttgaaa |
56346067 |
T |
|
| Q |
201 |
gaagtaatgtctcttgaagcacttgatg |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
56346066 |
gaagtaatgtctcttgaagcacttgatg |
56346039 |
T |
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