View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8590_high_23 (Length: 228)
Name: NF8590_high_23
Description: NF8590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8590_high_23 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 2 - 228
Target Start/End: Complemental strand, 29336400 - 29336161
Alignment:
| Q |
2 |
caatgatccgagtgcgactttgaaatcagaattctcacataatcagcactcaaaccaacaatctaaagataatattgatttggacaagataatggaagat |
101 |
Q |
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| T |
29336400 |
caatgatccgagtgcgactttgaaatcagaattctcacataatcagcactcaaaccaacaatctaaagataatattgatttggacaagataatggaagat |
29336301 |
T |
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| Q |
102 |
ttttgtcaaattgaacatgcttgctcct-------------tgataatagcaaaagtcatgatcagtcaaatcaaaagaatgtcaattctgaagagcttg |
188 |
Q |
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| T |
29336300 |
ttttgtcaaattgaacgtgcttgctccttgatgcatgacgatgataatagcaaaagtcatgatcagtcaaatcaaaagaatgtcaattctgaagagcttg |
29336201 |
T |
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| Q |
189 |
caagagatgcaattcatgattttgtgaatcaaaagatatt |
228 |
Q |
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| T |
29336200 |
caagagatgcaattcatgattttgtgaatcaaaagatatt |
29336161 |
T |
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