View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8590_high_3 (Length: 426)
Name: NF8590_high_3
Description: NF8590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8590_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 7 - 420
Target Start/End: Original strand, 7959874 - 7960287
Alignment:
| Q |
7 |
gatggacatcagacttcagtttaaggaaacaaagacaaacaaatgcagaatgttgttatctccggttatatttccttcaatttgtgaataagtaaaatta |
106 |
Q |
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| T |
7959874 |
gatggacaccagatttcagtttaaggaaacgaagacaaacaaatgtagaatgttgttatctccagttatacttccttcaatttgtgagtaagtaaaatta |
7959973 |
T |
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| Q |
107 |
tggcttaattacctatttggtttctttcactgaattacataaaacatgtgacatgtctaaaagaaatccaatttggctatcaacattgttgaatgtgact |
206 |
Q |
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| T |
7959974 |
tggcttaattacctattttgtttctttcactgaattacataaaacatgtgacatgtctaaaagaaattcaatttggctatcaacattgttgaatgtgact |
7960073 |
T |
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| Q |
207 |
taaactttcatgcttgaatggtgaaaaaatggtttgttattgtccaatatgaaaggcatatctggtggtgaggcgcaaggcatactctgggtgtttttat |
306 |
Q |
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| T |
7960074 |
taaactttcatgtttgaatggtgaaaaaatggtttgctattgtccaatatgaaaggcatatccggtggtgaggcgcaaggcatactctgggtgtttttat |
7960173 |
T |
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| Q |
307 |
cgcatttcgattctgtcccacatgccttgcgcatggagcaacacgcaaggcgcatcctggatctgctaacttgatgcaaggtgcctacatcaggtacaac |
406 |
Q |
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| T |
7960174 |
cacatttcggttctgtcccacatgccttgcgcatggagcaacatgcaaggcgcatcctggatatgctaacttgatgcaaggtgcctacatcaggtacatc |
7960273 |
T |
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| Q |
407 |
atctatgatgtcca |
420 |
Q |
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| T |
7960274 |
atctatgatttcca |
7960287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 9 - 286
Target Start/End: Original strand, 7964765 - 7965042
Alignment:
| Q |
9 |
tggacatcagacttcagtttaaggaaacaaagacaaacaaatgcagaatgttgttatctccggttatatttccttcaatttgtgaataagtaaaattatg |
108 |
Q |
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| T |
7964765 |
tggacaccacacttcaatctatggaaacaaagacaaacaaatgtacaatgttgttatcaccaattatatttccttcaatttgcaaagaagtaaaatcatg |
7964864 |
T |
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| Q |
109 |
gcttaattacctatttggtttctttcactgaattacataaaacatgtgacatgtctaaaagaaatccaatttggctatcaacattgttgaatgtgactta |
208 |
Q |
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| T |
7964865 |
gcttaattacatatttagttcctttcactgaattacataaaacatttgacatgtcttaaagaaatccaatttggctatcaacattgttgaatgtgactta |
7964964 |
T |
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| Q |
209 |
aactttcatgcttgaatggtgaaaaaatggtttgttattgtccaatatgaaaggcatatctggtggtgaggcgcaagg |
286 |
Q |
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| T |
7964965 |
aactttcatgtttgaatggtgaaaaaatggtttgttattgtccaatatgcaaggcatatgcggtggtgaggcgcaagg |
7965042 |
T |
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