View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8590_high_4 (Length: 408)
Name: NF8590_high_4
Description: NF8590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8590_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 16 - 392
Target Start/End: Complemental strand, 120245 - 119867
Alignment:
| Q |
16 |
tgtgtgacacgtcagccaaactacccccggacatgtactccatgaaaacatgcagttggttatcttgatgatcataatctgtccctaaacattggacaat |
115 |
Q |
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| T |
120245 |
tgtgtgacacgtcagccaaactacccccggacatgtactccatgaaaacatgcagttggttatcttgatgatcataatctgtccctaaacattggacaat |
120146 |
T |
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| Q |
116 |
atagggtgaaggtgatgaatttaatgtatttaggatattcacctcgttctccagagcatcacgtcctgcctctgaatgcgcttttttcaccacaaaaagt |
215 |
Q |
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| T |
120145 |
atagggtgaaggtgatgaatttaatgtatttaggatattcacctcgttctccagagcatcacgtcctgcctctgaatgcgcttttttcaccacaaaaagt |
120046 |
T |
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| Q |
216 |
ccaccggtggatttgttcatggctagatggacactgccaaaagatccacatccaaccattttacccttcatccattcactcccttttattattccgcaca |
315 |
Q |
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| T |
120045 |
ccaccagtggatttgttcatggctagatggacactgccaaaagatccacatccaaccattttacccttcatccattcactcccttttattattccgcaca |
119946 |
T |
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| Q |
316 |
--nnnnnnnatcataacaacttttccttttccttcctgaaaatatattctgaaaatgcaattaagtgcatccaaaaatc |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
119945 |
tttttttttatcataacaacttttccttttccttcctgaaaatatattctgaaaatgcaattaagtgcatccaaaaatc |
119867 |
T |
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