View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8590_high_5 (Length: 408)
Name: NF8590_high_5
Description: NF8590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8590_high_5 |
 | |
|
| [»] chr2 (5 HSPs) |
| |
|
| [»] scaffold0214 (1 HSPs) |
| | |
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Alignment Details
Target: chr2 (Bit Score: 364; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Original strand, 1026954 - 1027361
Alignment:
| Q |
1 |
gaggcccttggttaatattcgaccattgtctcgcagtcacacactggacgccagaatttgcatctccaaatgctaaggtggacaaaacaatcgtttgggt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1026954 |
gaggcccttggttaatattcgaccattgtctcgcagtcacacactggacgccataatttgcatctccaaatgctaaggtggacaaaacaatcgtttgggt |
1027053 |
T |
|
| Q |
101 |
gagatttccagggttgaacctagtttactatgacgagagctttctcttagctatggcttctgctctttgtcgccccattaaggttgatacaaacacactg |
200 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
1027054 |
gagatatccagggttgaacctagtttactatgatgagagctttctcttagctatggcttctgctcttggtcgccccattaaggttgatagaaacacactg |
1027153 |
T |
|
| Q |
201 |
aaaattgaacgaggtaaattcgcaagagtttgtgttgagattgatctaactatgccggtcgtaggaaagatttgggtaaacgggcattggtacaaagtcc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
1027154 |
aaaattgaacgaggtaaattcgcaagagtttgtgttgagattgatctgactatgccggtcgtaggaaagatttgggtaaacggacattggtacaaagtcc |
1027253 |
T |
|
| Q |
301 |
agtacgagggtctccacctaatttgcaccagttgcggttgttacgggcactttggacggaactacaccaccacacctccgactaagccagctgcagtcag |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1027254 |
agtacgagggtctccacctaatttgcaccagttgcggttgttacgggcacttgggacggaactgcaccaccacacctccgactaagccagccgcagtcaa |
1027353 |
T |
|
| Q |
401 |
ccaccatg |
408 |
Q |
| |
|
|||||||| |
|
|
| T |
1027354 |
ccaccatg |
1027361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 14656849 - 14656487
Alignment:
| Q |
1 |
gaggcccttggttaatattcgaccattgtctcgcagtcacacactggacgccagaatttgcatctccaaatgctaaggtggacaaaacaatcgtttgggt |
100 |
Q |
| |
|
|||||||||||||||| || || || || ||| ||||||| |||||| |||| |||||||||||||| |||||||| |||||||||||||| |||||||| |
|
|
| T |
14656849 |
gaggcccttggttaatctttgatcactgcctcacagtcacccactggtcgcctgaatttgcatctccgaatgctaaagtggacaaaacaattgtttgggt |
14656750 |
T |
|
| Q |
101 |
gagatttccagggttgaacctagtttactatgacgagagctttctcttagctatggcttctgctctttgtcgccccattaaggttgatacaaacacactg |
200 |
Q |
| |
|
||||| ||||| ||||| |||| |||||||| ||||| || | ||||||||||||||||||||| | |||||||| || ||||| |||||||| ||| |
|
|
| T |
14656749 |
tagattcccaggtctgaacttagtgtactatgatgagagtttcttgttagctatggcttctgctcttggccgccccatcaaagttgacacaaacaccctg |
14656650 |
T |
|
| Q |
201 |
aaaattgaacgaggtaaattcgcaagagtttgtgttgagattgatctaactatgccggtcgtaggaaagatttgggtaaacgggcattggtacaaagtcc |
300 |
Q |
| |
|
||||||||| ||||||||||||| ||||| ||||| || |||||||| ||| ||||||| ||||| || |||||||| ||||| | |||||||||||| | |
|
|
| T |
14656649 |
aaaattgaaagaggtaaattcgccagagtctgtgtggaaattgatctgactgtgccggtggtagggaaaatttgggtcaacggactttggtacaaagttc |
14656550 |
T |
|
| Q |
301 |
agtacgagggtctccacctaatttgcaccagttgcggttgttacgggcactttggacggaact |
363 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||| || || || ||||| ||| |||||| |
|
|
| T |
14656549 |
agtatgagggtctccacctaatttgcaccaactgcggatgctatggtcacttgggaaggaact |
14656487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 35138423 - 35138078
Alignment:
| Q |
1 |
gaggcccttggttaatattcgaccattgtctcgcagtcacacactggacgccagaatttgcatctccaaatgctaaggtggacaaaacaatcgtttgggt |
100 |
Q |
| |
|
||||||| |||||||| || || || ||||||||||| |||||||||| || |||||||| ||||||||||| ||||| ||||||||||| || ||||| |
|
|
| T |
35138423 |
gaggcccgtggttaatctttgatcactgtctcgcagtagcacactggactcctgaatttgcttctccaaatgccaaggtagacaaaacaattgtctgggt |
35138324 |
T |
|
| Q |
101 |
gagatttccagggttgaacctagtttactatgacgagagctttctcttagctatggcttctgctctttgtcgccccattaaggttgatacaaacacactg |
200 |
Q |
| |
|
||||||||||| || || || || || ||||| |||||||| || ||||| ||||| ||||||||| | ||||| ||||| || || |||||||| ||| |
|
|
| T |
35138323 |
aagatttccaggtttaaatcttgtgtattatgatgagagcttcctattagccatggcatctgctcttggccgccctattaaagtagacacaaacactctg |
35138224 |
T |
|
| Q |
201 |
aaaattgaacgaggtaaattcgcaagagtttgtgttgagattgatctaactatgccggtcgtaggaaagatttgggtaaacgggcattggtacaaagtcc |
300 |
Q |
| |
|
||||| ||||| |||||||| ||||||||||||||||| |||||||| ||| ||||||| || || || |||||||| ||||| || ||||||||||||| |
|
|
| T |
35138223 |
aaaatcgaacgtggtaaatttgcaagagtttgtgttgaaattgatctcactttgccggttgtcggtaaaatttgggttaacggacactggtacaaagtcc |
35138124 |
T |
|
| Q |
301 |
agtacgagggtctccacctaatttgcaccagttgcggttgttacgg |
346 |
Q |
| |
|
|||||||||| || || || |||||||| ||||| || |||||||| |
|
|
| T |
35138123 |
agtacgagggactacatcttatttgcacaagttgtggatgttacgg |
35138078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 42406419 - 42406090
Alignment:
| Q |
1 |
gaggcccttggttaatattcgaccattgtctcgcagtcacacactggacgccagaatttgcatctccaaatgctaaggtggacaaaacaatcgtttgggt |
100 |
Q |
| |
|
|||| ||||||||||| | |||||||||||| ||||||||||| ||| | || || || || ||||||||||| || ||||| | |||| |||||||||| |
|
|
| T |
42406419 |
gaggtccttggttaatttacgaccattgtcttgcagtcacacattggtcccccgagttcgcctctccaaatgccaaagtggaaagaacagtcgtttgggt |
42406320 |
T |
|
| Q |
101 |
gagatttccagggttgaacctagtttactatgacgagagctttctcttagctatggcttctgctctttgtcgccccattaaggttgatacaaacacactg |
200 |
Q |
| |
|
| |||||||| | || ||||| || || ||||| || |||||| |||||||||| || || || | || || || || ||||| || ||||| ||| |
|
|
| T |
42406319 |
ccgttttccaggtctaaatctagtctattacgacgaaagttttctcctagctatggcctcagcaattggccgaccaatcaaagttgacacgaacaccctg |
42406220 |
T |
|
| Q |
201 |
aaaattgaacgaggtaaattcgcaagagtttgtgttgagattgatctaactatgccggtcgtaggaaagatttgggtaaacgggcattggtacaaagtcc |
300 |
Q |
| |
|
||| |||||||||| ||||| |||||||| |||||||||||||| || ||| |||| || || || |||||||||||||| || || ||||||||| | | |
|
|
| T |
42406219 |
aaagttgaacgaggaaaatttgcaagagtctgtgttgagattgacctcactctgccagtagtggggaagatttgggtaaatggacactggtacaaaattc |
42406120 |
T |
|
| Q |
301 |
agtacgagggtctccacctaatttgcacca |
330 |
Q |
| |
|
||||||||||||| |||||||| ||||||| |
|
|
| T |
42406119 |
agtacgagggtctgcacctaatatgcacca |
42406090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 45 - 307
Target Start/End: Original strand, 174231 - 174493
Alignment:
| Q |
45 |
tggacgccagaatttgcatctccaaatgctaaggtggacaaaacaatcgtttgggtgagatttccagggttgaacctagtttactatgacgagagctttc |
144 |
Q |
| |
|
||||| || |||||||| ||||||||||| ||||| ||| ||| | |||||||| | ||||| || || || || ||||||||||| || |||||| |
|
|
| T |
174231 |
tggactccggaatttgcttctccaaatgcaaaggttgaccgcacagtagtttgggtacgttttcctggtttaaatctcgtttactatgatgaaagctttt |
174330 |
T |
|
| Q |
145 |
tcttagctatggcttctgctctttgtcgccccattaaggttgatacaaacacactgaaaattgaacgaggtaaattcgcaagagtttgtgttgagattga |
244 |
Q |
| |
|
| | || |||||||| ||||| || | || || |||||||| || || || |||||| ||||| | || |||||||| ||||| |||||||| ||||| |
|
|
| T |
174331 |
tgctcgcaatggcttcggctctaggtaggcctatcaaggttgacaccaataccctgaaagttgaaaggggaaaattcgcgagagtctgtgttgaaattga |
174430 |
T |
|
| Q |
245 |
tctaactatgccggtcgtaggaaagatttgggtaaacgggcattggtacaaagtccagtacga |
307 |
Q |
| |
|
||| ||| | ||||| || || || || ||||| ||||| || |||||||| || |||||||| |
|
|
| T |
174431 |
tctcactgtcccggtggtggggaaaatatgggtgaacggtcactggtacaaggttcagtacga |
174493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 8310869 - 8310630
Alignment:
| Q |
1 |
gaggcccttggttaatattcgaccattgtctcgcagtcacacactggacgccagaatttgcatctccaaatgctaaggtggacaaaacaatcgtttgggt |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
8310869 |
gaggcccttagttaatattcgaccattgtcttgcagtcacacactgaatgccagaatttgcatctccaaatgctaaggtggacaaaacaatcgtttcagt |
8310770 |
T |
|
| Q |
101 |
gagatttccagggttgaacctagtttactatgacgagagctttctcttagctatggcttctgctctttgtcgccccattaaggttgatacaaacacactg |
200 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||| |||||| |
|
|
| T |
8310769 |
gagatttccagggctgaacctagtttactatgacgagagctttctcttagctatggcttctgctcttggccgccccattaagattgatacaa--acactg |
8310672 |
T |
|
| Q |
201 |
aaaattgaacgaggtaaattcgcaagagtttgtgttgagatt |
242 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
8310671 |
aaaattgaacaaggtaaattcgcaagagtttgtgttgagatt |
8310630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 11894123 - 11894452
Alignment:
| Q |
1 |
gaggcccttggttaatattcgaccattgtctcgcagtcacacactggacgccagaatttgcatctccaaatgctaaggtggacaaaacaatcgtttgggt |
100 |
Q |
| |
|
|||| |||||||||||||| || || || || ||||||||||||||| | || ||||||||||||||||| | || || ||||||||||| |||||||| |
|
|
| T |
11894123 |
gaggtccttggttaatatttgatcactgccttgcagtcacacactggtcacctgaatttgcatctccaaactccaaagttgacaaaacaattgtttgggt |
11894222 |
T |
|
| Q |
101 |
gagatttccagggttgaacctagtttactatgacgagagctttctcttagctatggcttctgctctttgtcgccccattaaggttgatacaaacacactg |
200 |
Q |
| |
|
|||||| ||||| ||||| |||| |||||||| ||||| || | |||| ||||||||||||||| | |||||||| ||||| || |||||||| ||| |
|
|
| T |
11894223 |
gagattcccaggtctgaacttagtatactatgatgagagtttcttgctagccatggcttctgctcttggccgccccatcaaggtcgacacaaacaccctg |
11894322 |
T |
|
| Q |
201 |
aaaattgaacgaggtaaattcgcaagagtttgtgttgagattgatctaactatgccggtcgtaggaaagatttgggtaaacgggcattggtacaaagtcc |
300 |
Q |
| |
|
||||||||| ||||||| || || ||||| ||||| || |||||||||||||||||||| ||||| || |||||||| ||||| |||||||||||||| | |
|
|
| T |
11894323 |
aaaattgaaagaggtaagtttgccagagtctgtgtggaaattgatctaactatgccggtggtagggaaaatttgggtcaacggacattggtacaaagttc |
11894422 |
T |
|
| Q |
301 |
agtacgagggtctccacctaatttgcacca |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
11894423 |
agtacgagggtctccacctaatttgcacca |
11894452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 238 - 408
Target Start/End: Complemental strand, 8278462 - 8278292
Alignment:
| Q |
238 |
agattgatctaactatgccggtcgtaggaaagatttgggtaaacgggcattggtacaaagtccagtacgagggtctccacctaatttgcaccagttgcgg |
337 |
Q |
| |
|
|||||||| | ||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| || |
|
|
| T |
8278462 |
agattgatatgactatgcaggtcataggaaagatttgggtaaacggatattggtacaaagtccagtacgagggtctgcacctaatttgcaccagttgtgg |
8278363 |
T |
|
| Q |
338 |
ttgttacgggcactttggacggaactacaccaccacacctccgactaagccagctgcagtcagccaccatg |
408 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
8278362 |
ttgttacgggcaccttggacggaactgcaccaccacacctccgactaagccagccgcagtcaaccaccatg |
8278292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 238 - 408
Target Start/End: Complemental strand, 8307271 - 8307101
Alignment:
| Q |
238 |
agattgatctaactatgccggtcgtaggaaagatttgggtaaacgggcattggtacaaagtccagtacgagggtctccacctaatttgcaccagttgcgg |
337 |
Q |
| |
|
|||||||| | ||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| || |
|
|
| T |
8307271 |
agattgatatgactatgcaggtcataggaaagatttgggtaaacggatattggtacaaagtccagtacgagggtctgcacctaatttgcaccagttgtgg |
8307172 |
T |
|
| Q |
338 |
ttgttacgggcactttggacggaactacaccaccacacctccgactaagccagctgcagtcagccaccatg |
408 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
8307171 |
ttgttacgggcaccttggacggaactgcaccaccacacctccgactaagccagccgcagtcaaccaccatg |
8307101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 105 - 346
Target Start/End: Complemental strand, 38650273 - 38650032
Alignment:
| Q |
105 |
tttccagggttgaacctagtttactatgacgagagctttctcttagctatggcttctgctctttgtcgccccattaaggttgatacaaacacactgaaaa |
204 |
Q |
| |
|
|||||||| || ||||| ||||||||||| || |||||||| ||||| ||||| || || | | ||||| || || || || |||||||| |||||| |
|
|
| T |
38650273 |
tttccaggcttaaaccttgtttactatgatgaaagctttcttttagccatggcctccgcgataggccgcccaatcaaagtcgacacaaacactctgaaag |
38650174 |
T |
|
| Q |
205 |
ttgaacgaggtaaattcgcaagagtttgtgttgagattgatctaactatgccggtcgtaggaaagatttgggtaaacgggcattggtacaaagtccagta |
304 |
Q |
| |
|
||||| |||| ||||| ||||| || ||||| ||| ||||||| |||||||| || |||||||| || ||||| || || || |||||||| |||||||| |
|
|
| T |
38650173 |
ttgaaagaggaaaatttgcaagggtatgtgtcgaggttgatcttactatgccagtggtaggaaaaatatgggttaatggccactggtacaaggtccagta |
38650074 |
T |
|
| Q |
305 |
cgagggtctccacctaatttgcaccagttgcggttgttacgg |
346 |
Q |
| |
|
|| ||| | ||| | ||||| |||| ||||||||||||||| |
|
|
| T |
38650073 |
tgaaggtttacacttgatttgtaccaattgcggttgttacgg |
38650032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 96 - 292
Target Start/End: Original strand, 23421449 - 23421645
Alignment:
| Q |
96 |
tgggtgagatttccagggttgaacctagtttactatgacgagagctttctcttagctatggcttctgctctttgtcgccccattaaggttgatacaaaca |
195 |
Q |
| |
|
||||| ||||| ||||| ||||||| || |||||||| || ||||| || ||||| ||||||||||| | | | || || || || || ||||||| |
|
|
| T |
23421449 |
tgggtcagattcccaggtctgaaccttgtatactatgatgaaagcttccttttagcaatggcttctgcgatcggaagaccaatcaaagtcgacacaaaca |
23421548 |
T |
|
| Q |
196 |
cactgaaaattgaacgaggtaaattcgcaagagtttgtgttgagattgatctaactatgccggtcgtaggaaagatttgggtaaacgggcattggta |
292 |
Q |
| |
|
|||||||| ||||| |||| ||||| |||||||| ||||| || |||||||| || | || |||||||| || |||||||| || || |||||||| |
|
|
| T |
23421549 |
cactgaaagttgaaagaggaaaatttgcaagagtgtgtgtcgaaattgatctcacggtcccagtcgtagggaaaatttgggttaatggtcattggta |
23421645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 267 - 346
Target Start/End: Complemental strand, 15479599 - 15479520
Alignment:
| Q |
267 |
aagatttgggtaaacgggcattggtacaaagtccagtacgagggtctccacctaatttgcaccagttgcggttgttacgg |
346 |
Q |
| |
|
||||||||||| || || |||||||||||| | ||||||||||| ||||| ||||| ||||||| || ||||||||||| |
|
|
| T |
15479599 |
aagatttgggtgaatggacattggtacaaaattcagtacgagggcctccatctaatatgcaccaactgtggttgttacgg |
15479520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 121 - 328
Target Start/End: Complemental strand, 53611430 - 53611223
Alignment:
| Q |
121 |
tagtttactatgacgagagctttctcttagctatggcttctgctctttgtcgccccattaaggttgatacaaacacactgaaaattgaacgaggtaaatt |
220 |
Q |
| |
|
||||||| |||||||| | ||||| || ||||||||||| || || ||||||| || ||||| || |||||||| |||||| | ||| |||| ||||| |
|
|
| T |
53611430 |
tagtttattatgacgaaaattttcttttggctatggcttcagcaattggtcgcccgataaaggtggacacaaacactctgaaagtcgaaagaggaaaatt |
53611331 |
T |
|
| Q |
221 |
cgcaagagtttgtgttgagattgatctaactatgccggtcgtaggaaagatttgggtaaacgggcattggtacaaagtccagtacgagggtctccaccta |
320 |
Q |
| |
|
|| ||||||||||| || | ||||| || ||||| || ||||| |||||||| || || ||||||||||| || || || || || |||||| | |
|
|
| T |
53611330 |
tgcgagagtttgtgtggaagtcgatcttacagcaccggtggtcggaaaaatttgggtgaatggtcattggtacaaggttcaatatgaaggcctccacttg |
53611231 |
T |
|
| Q |
321 |
atttgcac |
328 |
Q |
| |
|
|||||||| |
|
|
| T |
53611230 |
atttgcac |
53611223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 15479865 - 15479784
Alignment:
| Q |
1 |
gaggcccttggttaatattcgaccattgtctcgcagtcacacactggacgccagaatttgcatctccaaatgctaaggtgga |
82 |
Q |
| |
|
|||| ||||||||||| | |||||||||||| ||||||||||| ||| | | || ||||| ||||||||||| || ||||| |
|
|
| T |
15479865 |
gaggtccttggttaatttacgaccattgtcttgcagtcacacattggtccctcgagtttgcctctccaaatgccaaagtgga |
15479784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 146; Significance: 9e-77; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 23135757 - 23135428
Alignment:
| Q |
1 |
gaggcccttggttaatattcgaccattgtctcgcagtcacacactggacgccagaatttgcatctccaaatgctaaggtggacaaaacaatcgtttgggt |
100 |
Q |
| |
|
|||| |||||||||||||| || || || || ||||||||||||||| | || ||||||||||||||||| | || || ||||||||||| |||||||| |
|
|
| T |
23135757 |
gaggtccttggttaatatttgatcactgccttgcagtcacacactggtcacctgaatttgcatctccaaacaccaaagttgacaaaacaattgtttgggt |
23135658 |
T |
|
| Q |
101 |
gagatttccagggttgaacctagtttactatgacgagagctttctcttagctatggcttctgctctttgtcgccccattaaggttgatacaaacacactg |
200 |
Q |
| |
|
|||||| ||||| ||||| |||| |||||||| ||||| || | |||| ||||||||||||||| | |||||||| ||||| || |||||||| ||| |
|
|
| T |
23135657 |
gagattcccaggtctgaacttagtatactatgatgagagtttcttgctagcaatggcttctgctcttggccgccccatcaaggtcgacacaaacaccctg |
23135558 |
T |
|
| Q |
201 |
aaaattgaacgaggtaaattcgcaagagtttgtgttgagattgatctaactatgccggtcgtaggaaagatttgggtaaacgggcattggtacaaagtcc |
300 |
Q |
| |
|
||||||||| ||||||| || || ||||| ||||| || |||||||||||||||||||| ||||| || |||||||| ||||| |||||||||||||| | |
|
|
| T |
23135557 |
aaaattgaaagaggtaagtttgccagagtctgtgtggaaattgatctaactatgccggtggtagggaaaatttgggtcaacggacattggtacaaagttc |
23135458 |
T |
|
| Q |
301 |
agtacgagggtctccacctaatttgcacca |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
23135457 |
agtacgagggtctccacctaatttgcacca |
23135428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 142; Significance: 2e-74; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 20281824 - 20282153
Alignment:
| Q |
1 |
gaggcccttggttaatattcgaccattgtctcgcagtcacacactggacgccagaatttgcatctccaaatgctaaggtggacaaaacaatcgtttgggt |
100 |
Q |
| |
|
|||| |||||||||||||| || || || || ||||||||||||||| | || ||||||||||||||||| | || || ||||||||||| |||||||| |
|
|
| T |
20281824 |
gaggtccttggttaatatttgatcactgccttgcagtcacacactggtcacctgaatttgcatctccaaacaccaaagttgacaaaacaattgtttgggt |
20281923 |
T |
|
| Q |
101 |
gagatttccagggttgaacctagtttactatgacgagagctttctcttagctatggcttctgctctttgtcgccccattaaggttgatacaaacacactg |
200 |
Q |
| |
|
|||||| ||||| ||||| |||| |||||||| ||||| || | |||| ||||||||||||||| | |||||||| ||||| || |||||||| ||| |
|
|
| T |
20281924 |
gagattcccaggtctgaacttagtatactatgatgagagtttcttgctagccatggcttctgctcttggccgccccatcaaggtcgacacaaacaccctg |
20282023 |
T |
|
| Q |
201 |
aaaattgaacgaggtaaattcgcaagagtttgtgttgagattgatctaactatgccggtcgtaggaaagatttgggtaaacgggcattggtacaaagtcc |
300 |
Q |
| |
|
||||||||| ||||||| || || ||||| ||||| || |||||||||||||||||||| ||||| || |||||||| ||||| |||||||||||||| | |
|
|
| T |
20282024 |
aaaattgaaagaggtaagtttgccagagtctgtgtggaaattgatctaactatgccggtggtagggaaaatttgggtcaacggacattggtacaaagttc |
20282123 |
T |
|
| Q |
301 |
agtacgagggtctccacctaatttgcacca |
330 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |
|
|
| T |
20282124 |
agtacgagagtctccacctaatttgcacca |
20282153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 105 - 346
Target Start/End: Complemental strand, 5196143 - 5195902
Alignment:
| Q |
105 |
tttccagggttgaacctagtttactatgacgagagctttctcttagctatggcttctgctctttgtcgccccattaaggttgatacaaacacactgaaaa |
204 |
Q |
| |
|
|||||||| |||||| | |||||||| ||||| ||||| || ||||||||||| || || | | ||||| || || || || |||| || |||||| |
|
|
| T |
5196143 |
tttccaggtttgaacattgtttactacgacgaaagcttccttttagctatggcctcagcgatcggccgccctataaaagtagacccaaatactctgaaag |
5196044 |
T |
|
| Q |
205 |
ttgaacgaggtaaattcgcaagagtttgtgttgagattgatctaactatgccggtcgtaggaaagatttgggtaaacgggcattggtacaaagtccagta |
304 |
Q |
| |
|
||||| |||| |||||||||||| | ||||| || |||||||| ||| | || || |||||||| | |||||| || || ||||| ||||| || || || |
|
|
| T |
5196043 |
ttgaaagaggaaaattcgcaagaatctgtgtcgaaattgatcttactgttccagtagtaggaaaaaattgggttaatggccattgatacaaggtacaata |
5195944 |
T |
|
| Q |
305 |
cgagggtctccacctaatttgcaccagttgcggttgttacgg |
346 |
Q |
| |
|
|| ||||| || ||||||||||| | ||||||||||||||| |
|
|
| T |
5195943 |
tgaaggtctgcatctaatttgcacaaattgcggttgttacgg |
5195902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 91 - 196
Target Start/End: Original strand, 50448952 - 50449057
Alignment:
| Q |
91 |
tcgtttgggtgagatttccagggttgaacctagtttactatgacgagagctttctcttagctatggcttctgctctttgtcgccccattaaggttgatac |
190 |
Q |
| |
|
|||||||||| |||||||||| ||||||| || ||||| ||||||||||| || ||||| ||||||||||| || |||| || || || ||||| || |
|
|
| T |
50448952 |
tcgtttgggttcgatttccaggtctgaaccttgtctactacgacgagagcttcctattagccatggcttctgcaattggtcgaccgatcaaagttgacac |
50449051 |
T |
|
| Q |
191 |
aaacac |
196 |
Q |
| |
|
|||||| |
|
|
| T |
50449052 |
aaacac |
50449057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 126; Significance: 7e-65; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 57 - 346
Target Start/End: Original strand, 7810816 - 7811105
Alignment:
| Q |
57 |
tttgcatctccaaatgctaaggtggacaaaacaatcgtttgggtgagatttccagggttgaacctagtttactatgacgagagctttctcttagctatgg |
156 |
Q |
| |
|
|||||||||||| |||| || ||||| ||||| |||||||||||||||| ||||||||| ||||| ||||| ||||||||||| || | ||||||| |
|
|
| T |
7810816 |
tttgcatctccagatgccaaagtggatcgcacaatagtttgggtgagatttctagggttgaatctagtctactacgacgagagcttcctgcttgctatgg |
7810915 |
T |
|
| Q |
157 |
cttctgctctttgtcgccccattaaggttgatacaaacacactgaaaattgaacgaggtaaattcgcaagagtttgtgttgagattgatctaactatgcc |
256 |
Q |
| |
|
|||| || ||| | ||||| || || || || || |||||||||||||||||| |||| |||||||||||||| |||||||| |||||||| |||||||| |
|
|
| T |
7810916 |
cttcagcacttggccgcccaataaaagtggacactaacacactgaaaattgaaagaggaaaattcgcaagagtctgtgttgaaattgatcttactatgcc |
7811015 |
T |
|
| Q |
257 |
ggtcgtaggaaagatttgggtaaacgggcattggtacaaagtccagtacgagggtctccacctaatttgcaccagttgcggttgttacgg |
346 |
Q |
| |
|
||| |||||||| |||||||| ||||| |||||||||||||||||||| |||||||| |||||||||||||| || || || |||||||| |
|
|
| T |
7811016 |
ggtagtaggaaaaatttgggttaacggccattggtacaaagtccagtatgagggtcttcacctaatttgcacaagctgtggatgttacgg |
7811105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 114 - 333
Target Start/End: Original strand, 23942086 - 23942305
Alignment:
| Q |
114 |
ttgaacctagtttactatgacgagagctttctcttagctatggcttctgctctttgtcgccccattaaggttgatacaaacacactgaaaattgaacgag |
213 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| ||||||||||||| ||| || || | || || || || || |||||||| ||||| | ||| ||| |
|
|
| T |
23942086 |
ttgaacctagtttattatgacgagagctttctcctagctatggcttcagctattggtagaccaataaaagtggacacaaacaccttgaaagtcgaaagag |
23942185 |
T |
|
| Q |
214 |
gtaaattcgcaagagtttgtgttgagattgatctaactatgccggtcgtaggaaagatttgggtaaacgggcattggtacaaagtccagtacgagggtct |
313 |
Q |
| |
|
| ||||| | ||||| || || || | ||||| || ||||| || ||||| |||||||| || || ||||||||||| |||||||| || ||||| |
|
|
| T |
23942186 |
gaaaatttgtgagagtctgcgtagaagtcgatcttacagcaccggtggtcggaaaaatttgggttaatggtcattggtacaaggtccagtatgaaggtct |
23942285 |
T |
|
| Q |
314 |
ccacctaatttgcaccagtt |
333 |
Q |
| |
|
||| | |||||||| |||| |
|
|
| T |
23942286 |
ccatttgatttgcacaagtt |
23942305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0214 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0214
Description:
Target: scaffold0214; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 177 - 346
Target Start/End: Original strand, 6079 - 6248
Alignment:
| Q |
177 |
attaaggttgatacaaacacactgaaaattgaacgaggtaaattcgcaagagtttgtgttgagattgatctaactatgccggtcgtaggaaagatttggg |
276 |
Q |
| |
|
||||||||||| |||||||| |||||| ||||| | ||||| || || |||||||||| ||| ||||||| || |||||||| | ||||| || |||| |
|
|
| T |
6079 |
attaaggttgacacaaacacgctgaaagttgaaaggggtaagtttgctcgagtttgtgtcgaggttgatctcacaatgccggtgattggaaaaatctggg |
6178 |
T |
|
| Q |
277 |
taaacgggcattggtacaaagtccagtacgagggtctccacctaatttgcaccagttgcggttgttacgg |
346 |
Q |
| |
|
|||| || |||||||| ||||| || || ||||| |||||||| || ||||| | |||||| |||||||| |
|
|
| T |
6179 |
taaatggtcattggtataaagttcaatatgagggcctccaccttatatgcactaattgcggctgttacgg |
6248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 328
Target Start/End: Complemental strand, 7590679 - 7590577
Alignment:
| Q |
226 |
gagtttgtgttgagattgatctaactatgccggtcgtaggaaagatttgggtaaacgggcattggtacaaagtccagtacgagggtctccacctaatttg |
325 |
Q |
| |
|
|||| ||||||||||||||||| || ||||||| || || || |||||||| || || |||||||||||| | |||||||| || || || |||||||| |
|
|
| T |
7590679 |
gagtctgtgttgagattgatcttacggtgccggtagtgggtaaaatttgggtcaatggacattggtacaaaatacagtacgaaggacttcatctaatttg |
7590580 |
T |
|
| Q |
326 |
cac |
328 |
Q |
| |
|
||| |
|
|
| T |
7590579 |
cac |
7590577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 346
Target Start/End: Complemental strand, 46787558 - 46787386
Alignment:
| Q |
174 |
cccattaaggttgatacaaacacactgaaaattgaacgaggtaaattcgcaagagtttgtgttgagattgatctaactatgccggtcgtaggaaagattt |
273 |
Q |
| |
|
||||| ||||||||||| ||||| || || ||||| |||| |||||||| ||||| || ||||| ||||| || ||| | ||||| || || || || | |
|
|
| T |
46787558 |
cccataaaggttgatactaacactcttaaggttgaaagaggaaaattcgctagagtatgcgttgaaattgaccttactgttccggtggtggggaaaatat |
46787459 |
T |
|
| Q |
274 |
gggtaaacgggcattggtacaaagtccagtacgagggtctccacctaatttgcaccagttgcggttgttacgg |
346 |
Q |
| |
|
|||| ||||| ||||||||||| || || ||| | || || ||| ||||||| |||| ||||| |||||||| |
|
|
| T |
46787458 |
gggtgaacggacattggtacaaggttcaatacaaagggctacacttaatttgtaccaactgcggatgttacgg |
46787386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 324
Target Start/End: Complemental strand, 16772902 - 16772842
Alignment:
| Q |
264 |
ggaaagatttgggtaaacgggcattggtacaaagtccagtacgagggtctccacctaattt |
324 |
Q |
| |
|
|||||||| ||||| ||| | |||||||||||||||||||| || ||||| |||||||||| |
|
|
| T |
16772902 |
ggaaagatatgggtgaactgtcattggtacaaagtccagtatgaaggtcttcacctaattt |
16772842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 346
Target Start/End: Original strand, 27151025 - 27151111
Alignment:
| Q |
260 |
cgtaggaaagatttgggtaaacgggcattggtacaaagtccagtacgagggtctccacctaatttgcaccagttgcggttgttacgg |
346 |
Q |
| |
|
||||||||| |||||||| ||||| || | |||||| ||||| | || |||||||||||||| ||||| | ||| ||||||||||| |
|
|
| T |
27151025 |
cgtaggaaaaatttgggtcaacggtcacttgtacaaggtccaacatgaaggtctccacctaatatgcacaaattgtggttgttacgg |
27151111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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